WormBase Tree Display for Gene: WBGene00009460
expand all nodes | collapse all nodes | view schema
WBGene00009460 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | ubr-5 | Person_evidence | WBPerson2634 | |||||
WBPerson2601 | |||||||||
Sequence_name | F36A2.13 | ||||||||
Molecular_name | F36A2.13 | ||||||||
F36A2.13.1 | |||||||||
CE24948 | |||||||||
F36A2.13.2 | |||||||||
Other_name | sog-1 | Paper_evidence | WBPaper00049574 | ||||||
CELE_F36A2.13 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | ubr-5 | ||||||||
DB_info | Database | AceView | gene | 1J404 | |||||
WormQTL | gene | WBGene00009460 | |||||||
WormFlux | gene | WBGene00009460 | |||||||
NDB | locus_tag | CELE_F36A2.13 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009460|UniProtKB=G5EDT9 | |||||||
family | PTHR46276 | ||||||||
NCBI | gene | 172697 | |||||||
RefSeq | protein | NM_059988.6 | |||||||
TREEFAM | TREEFAM_ID | TF314406 | |||||||
TrEMBL | UniProtAcc | G5EDT9 | |||||||
UniProt_GCRP | UniProtAcc | G5EDT9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 08 Oct 2014 12:51:06 | WBPerson2970 | Event | Acquires_merge | WBGene00004934 | ||||
Name_change | CGC_name | ubr-5 | |||||||
3 | 04 Nov 2016 15:58:40 | WBPerson2970 | Name_change | Other_name | sog-1 | ||||
Acquires_merge | WBGene00004934 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ubr | ||||||||
Allele (132) | |||||||||
Legacy_information | [Maine EM] Recessive suppressor of ts glp-1 alleles q224 and q231, suppresses both germ-line and embryonic defects. Does not suppress stronger glp-1 alleles. No phenotype alone. Other alleles exhibit complex non-allelic non-complementation with mutations of other sog genes. | ||||||||
[C.elegansII] q305 : recessive suppressor of ts glp-1 alleles q224 and q231, suppresses both germ-line and embryonic defects. Does not suppress stronger glp-1 alleles. No phenotype alone. Other alleles exhibit complex non-allelic non-complementation with mutations of other sog genes. OA1: q298 [Maine and Kimble 1993; EL] | |||||||||
Complementation_data | [Maine EM] Fails to complement 6 other sog-1 alleles, complements mutations of other sog genes. | ||||||||
Strain | WBStrain00022531 | ||||||||
WBStrain00031823 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00014757 | ||||||||
00014758 | |||||||||
00014759 | |||||||||
00014760 | |||||||||
00014761 | |||||||||
00014762 | |||||||||
00014763 | |||||||||
00117120 | |||||||||
00117121 | |||||||||
00117122 | |||||||||
Ortholog (56) | |||||||||
Paralog | WBGene00016650 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00003898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007009 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008429 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00009738 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00016405 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00017782 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021685 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022069 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022358 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | F36A2.13 encodes an E3 ubiquitin ligase similar to the mammalian UBR5 ubiquitin ligases; F36A2.13 is predicted to function in ubiquitin-dependent protein catabolic processes. | Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 18 Jul 2014 00:00:00 | ||||||||
Automated_description | Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in positive regulation of canonical Wnt signaling pathway and protein polyubiquitination. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in carcinoma (multiple) and invasive ductal carcinoma. Is an ortholog of human UBR5 (ubiquitin protein ligase E3 component n-recognin 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||
DOID:3008 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:234 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:219 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:3717 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:4948 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:2600 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16806) | ||||||
Molecular_info | Corresponding_CDS | F36A2.13 | |||||||
Corresponding_transcript | F36A2.13.1 | ||||||||
F36A2.13.2 | |||||||||
Other_sequence (42) | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00084251 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00094647 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076380 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046441 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003602 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022573 | ||||||||
Expr1034143 | |||||||||
Expr1150310 | |||||||||
Expr2017729 | |||||||||
Expr2035867 | |||||||||
Drives_construct | WBCnstr00032166 | ||||||||
Construct_product | WBCnstr00032166 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (149) | |||||||||
Interaction (47) | |||||||||
Map_info | Map | I | Position | 3.21396 | |||||
Positive | Positive_clone | F36A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 2000 | |||||||
2001 | |||||||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |