WormBase Tree Display for Gene: WBGene00003898
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| WBGene00003898 | SMap | S_parent | Sequence | Y39A1C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | oxi-1 | Person_evidence | WBPerson286 | |||||
| Sequence_name | Y39A1C.2 | ||||||||
| Molecular_name | Y39A1C.2 | ||||||||
| Y39A1C.2.1 | |||||||||
| CE19147 | |||||||||
| Other_name | CELE_Y39A1C.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | oxi-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | oxi | ||||||||
| Allele (161) | |||||||||
| Strain | WBStrain00031877 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104325 | ||||||||
| 00104326 | |||||||||
| 00104327 | |||||||||
| 00104328 | |||||||||
| 00111967 | |||||||||
| 00111968 | |||||||||
| 00111969 | |||||||||
| Contained_in_operon | CEOP3704 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00008429 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00007009 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009460 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009738 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016405 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017782 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021685 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022069 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022358 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Human ortholog(s) of this gene implicated in Kaufman oculocerebrofacial syndrome. Is an ortholog of human UBE3B (ubiquitin protein ligase E3B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111456 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13478) | ||||
| Molecular_info | Corresponding_CDS | Y39A1C.2 | |||||||
| Corresponding_transcript | Y39A1C.2.1 | ||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf994174 | ||||||||
| WBsf994175 | |||||||||
| WBsf225770 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076775 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020352 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006104 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103054 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094649 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056128 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016647 | ||||||||
| Expr1031837 | |||||||||
| Expr1159641 | |||||||||
| Expr2014670 | |||||||||
| Expr2032903 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | III | Position | 5.46763 | Error | 0.014922 | |||
| Positive | Positive_clone | Y39A1C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4981 | |||||||
| 4463 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002556 | ||||||||
| WBPaper00003539 | |||||||||
| WBPaper00027315 | |||||||||
| WBPaper00033115 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041777 | |||||||||
| WBPaper00042470 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055106 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
