WormBase Tree Display for Gene: WBGene00009001
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| WBGene00009001 | SMap | S_parent | Sequence | F21C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | tyr-3 | Person_evidence | WBPerson69 | |||||
| Sequence_name | F21C3.2 | ||||||||
| Molecular_name | F21C3.2 | ||||||||
| F21C3.2.1 | |||||||||
| CE42097 | |||||||||
| Other_name | CELE_F21C3.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | tyr-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Feb 2005 11:34:52 | WBPerson2970 | Name_change | CGC_name | tyr-3 | ||||
| 3 | 18 Jan 2008 15:23:16 | WBPerson1983 | Event | Split_into | WBGene00077548 | ||||
| Split_into | WBGene00077548 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tyr | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00031861 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00065451 | ||||||||
| 00065452 | |||||||||
| 00065453 | |||||||||
| 00116799 | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00015332 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010661 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021553 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016419 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022231 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017483 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable metal ion binding activity and monooxygenase activity. Expressed in head mesodermal cell. Human ortholog(s) of this gene implicated in several diseases, including ocular albinism 1; oculocutaneous albinism (multiple); and vitiligo. Is an ortholog of human DCT (dopachrome tautomerase) and TYR (tyrosinase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050633 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||
| DOID:8465 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
| DOID:0070097 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12450) | ||||||
| DOID:8923 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
| DOID:0050632 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442,HGNC:12450,HGNC:2709) | ||||||
| DOID:12306 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
| DOID:0070095 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
| DOID:0070094 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
| DOID:1909 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442) | ||||||
| DOID:10123 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12442,HGNC:12450) | ||||||
| Molecular_info | Corresponding_CDS | F21C3.2 | |||||||
| Corresponding_CDS_history | F21C3.2:wp187 | ||||||||
| Corresponding_transcript | F21C3.2.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf664428 | ||||||||
| WBsf984135 | |||||||||
| WBsf219726 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00098214 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045180 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000419 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003410 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098218 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10599 | ||||||||
| Expr1011359 | |||||||||
| Expr1149120 | |||||||||
| Expr2017687 | |||||||||
| Expr2035825 | |||||||||
| Drives_construct | WBCnstr00006924 | ||||||||
| WBCnstr00021941 | |||||||||
| WBCnstr00032534 | |||||||||
| Construct_product | WBCnstr00006924 | ||||||||
| WBCnstr00021941 | |||||||||
| WBCnstr00032534 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | I | Position | 1.87005 | Error | 0.000703 | |||
| Positive | Positive_clone | F21C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5056 | |||||||
| 4953 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00022302 | ||||||||
| WBPaper00036343 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044177 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
