WormBase Tree Display for Gene: WBGene00007932
expand all nodes | collapse all nodes | view schema
| WBGene00007932 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | zip-5 | Person_evidence | WBPerson3520 | |||||
| WBPerson460 | |||||||||
| Sequence_name | C34D1.5 | ||||||||
| Molecular_name | C34D1.5a | ||||||||
| C34D1.5a.1 | |||||||||
| CE18541 | |||||||||
| C34D1.5b | |||||||||
| CE42551 | |||||||||
| C34D1.5c | |||||||||
| CE42550 | |||||||||
| C34D1.5b.1 | |||||||||
| C34D1.5c.1 | |||||||||
| Other_name | CELE_C34D1.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | zip-5 | ||||||||
| DB_info | Database | AceView | gene | 5N749 | |||||
| WormQTL | gene | WBGene00007932 | |||||||
| WormFlux | gene | WBGene00007932 | |||||||
| NDB | locus_tag | CELE_C34D1.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007932|UniProtKB=G5EBE5 | |||||||
| family | PTHR13044 | ||||||||
| NCBI | gene | 183204 | |||||||
| RefSeq | protein | NM_001129402.1 | |||||||
| NM_001129401.4 | |||||||||
| NM_073891.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF318903 | |||||||
| TrEMBL | UniProtAcc | G5EG34 | |||||||
| B1V8I9 | |||||||||
| G5EBE5 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EBE5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Nov 2006 11:33:19 | WBPerson1847 | Name_change | CGC_name | zip-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zip | ||||||||
| Allele (67) | |||||||||
| Strain | WBStrain00036563 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005737 | ||||||||
| 00005738 | |||||||||
| 00005739 | |||||||||
| 00009368 | |||||||||
| 00009369 | |||||||||
| 00115916 | |||||||||
| 00115917 | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00000221 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00012330 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00077761 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00013878 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | zip-5 encodes a bZip transcription factor; a zip-5::gfp promoter reporter gene fusion is expressed primarily in the nervous system, with mid- and late-stage embryos showing strong expression in head neurons, while larvae show expression in the ventral nerve cord and head and tail neurons; adults also show GFP expression in head muscles and intermittently in the intestine. | Paper_evidence | WBPaper00029055 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Feb 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Expressed in head muscle; head neurons; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34D1.5a | |||||||
| C34D1.5b | |||||||||
| C34D1.5c | |||||||||
| Corresponding_transcript | C34D1.5a.1 | ||||||||
| C34D1.5b.1 | |||||||||
| C34D1.5c.1 | |||||||||
| Other_sequence | CBC08146_1 | ||||||||
| Associated_feature | WBsf662010 | ||||||||
| WBsf662011 | |||||||||
| WBsf662012 | |||||||||
| WBsf717270 | |||||||||
| WBsf978371 | |||||||||
| WBsf1001781 | |||||||||
| Transcription_factor | WBTranscriptionFactor000225 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00115932 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041862 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011589 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029515 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7465 | ||||||||
| Expr16388 | |||||||||
| Expr1010880 | |||||||||
| Expr1033442 | |||||||||
| Expr1145881 | |||||||||
| Expr2018159 | |||||||||
| Expr2036296 | |||||||||
| Drives_construct (3) | |||||||||
| Construct_product | WBCnstr00021776 | ||||||||
| WBCnstr00033372 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (227) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | V | Position | 5.04755 | Error | 0.021484 | |||
| Positive | Positive_clone | C34D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00031111 | |||||||||
| WBPaper00038487 | |||||||||
| WBPaper00064871 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
