WormBase Tree Display for Gene: WBGene00007932
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WBGene00007932 | SMap | S_parent | Sequence | CHROMOSOME_V | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | zip-5 | Person_evidence | WBPerson3520 | |||
WBPerson460 | |||||||
Sequence_name | C34D1.5 | ||||||
Molecular_name | C34D1.5a | ||||||
C34D1.5a.1 | |||||||
CE18541 | |||||||
C34D1.5b | |||||||
CE42551 | |||||||
C34D1.5c | |||||||
CE42550 | |||||||
C34D1.5b.1 | |||||||
C34D1.5c.1 | |||||||
Other_name | CELE_C34D1.5 | Accession_evidence | NDB | BX284605 | |||
Public_name | zip-5 | ||||||
DB_info | Database | AceView | gene | 5N749 | |||
WormQTL | gene | WBGene00007932 | |||||
WormFlux | gene | WBGene00007932 | |||||
NDB | locus_tag | CELE_C34D1.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00007932|UniProtKB=G5EBE5 | |||||
family | PTHR13044 | ||||||
NCBI | gene | 183204 | |||||
RefSeq | protein | NM_001129402.1 | |||||
NM_001129401.4 | |||||||
NM_073891.3 | |||||||
TREEFAM | TREEFAM_ID | TF318903 | |||||
TrEMBL | UniProtAcc | G5EG34 | |||||
B1V8I9 | |||||||
G5EBE5 | |||||||
UniProt_GCRP | UniProtAcc | G5EBE5 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | zip | ||||||
Allele (67) | |||||||
Strain | WBStrain00036563 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00005737 | ||||||
00005738 | |||||||
00005739 | |||||||
00009368 | |||||||
00009369 | |||||||
00115916 | |||||||
00115917 | |||||||
Ortholog (18) | |||||||
Paralog | WBGene00000221 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00012330 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00077761 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00013878 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Concise_description | zip-5 encodes a bZip transcription factor; a zip-5::gfp promoter reporter gene fusion is expressed primarily in the nervous system, with mid- and late-stage embryos showing strong expression in head neurons, while larvae show expression in the ventral nerve cord and head and tail neurons; adults also show GFP expression in head muscles and intermittently in the intestine. | Paper_evidence | WBPaper00029055 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Feb 2008 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Expressed in head muscle; head neurons; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C34D1.5a | |||||
C34D1.5b | |||||||
C34D1.5c | |||||||
Corresponding_transcript | C34D1.5a.1 | ||||||
C34D1.5b.1 | |||||||
C34D1.5c.1 | |||||||
Other_sequence | CBC08146_1 | ||||||
Associated_feature | WBsf662010 | ||||||
WBsf662011 | |||||||
WBsf662012 | |||||||
WBsf717270 | |||||||
WBsf978371 | |||||||
WBsf1001781 | |||||||
Transcription_factor | WBTranscriptionFactor000225 | ||||||
Experimental_info | RNAi_result | WBRNAi00115932 | Inferred_automatically | RNAi_primary | |||
WBRNAi00041862 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011589 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029515 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr7465 | ||||||
Expr16388 | |||||||
Expr1010880 | |||||||
Expr1033442 | |||||||
Expr1145881 | |||||||
Expr2018159 | |||||||
Expr2036296 | |||||||
Drives_construct | WBCnstr00012609 | ||||||
WBCnstr00033372 | |||||||
WBCnstr00042989 | |||||||
Construct_product (2) | |||||||
Microarray_results (18) | |||||||
Expression_cluster (227) | |||||||
Interaction (13) | |||||||
Map_info | Map | V | Position | 5.04755 | Error | 0.021484 | |
Positive | Positive_clone | C34D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00027309 | ||||||
WBPaper00031111 | |||||||
WBPaper00038487 | |||||||
WBPaper00064871 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |