WormBase Tree Display for Gene: WBGene00007932
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WBGene00007932 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | zip-5 | Person_evidence | WBPerson3520 | |||||
WBPerson460 | |||||||||
Sequence_name | C34D1.5 | ||||||||
Molecular_name | C34D1.5a | ||||||||
C34D1.5a.1 | |||||||||
CE18541 | |||||||||
C34D1.5b | |||||||||
CE42551 | |||||||||
C34D1.5c | |||||||||
CE42550 | |||||||||
C34D1.5b.1 | |||||||||
C34D1.5c.1 | |||||||||
Other_name | CELE_C34D1.5 | Accession_evidence | NDB | BX284605 | |||||
Public_name | zip-5 | ||||||||
DB_info | Database (10) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Nov 2006 11:33:19 | WBPerson1847 | Name_change | CGC_name | zip-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | zip | ||||||||
Allele (67) | |||||||||
Strain | WBStrain00036563 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00005737 | ||||||||
00005738 | |||||||||
00005739 | |||||||||
00009368 | |||||||||
00009369 | |||||||||
00115916 | |||||||||
00115917 | |||||||||
Ortholog (18) | |||||||||
Paralog | WBGene00000221 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00012330 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00077761 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00013878 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | zip-5 encodes a bZip transcription factor; a zip-5::gfp promoter reporter gene fusion is expressed primarily in the nervous system, with mid- and late-stage embryos showing strong expression in head neurons, while larvae show expression in the ventral nerve cord and head and tail neurons; adults also show GFP expression in head muscles and intermittently in the intestine. | Paper_evidence | WBPaper00029055 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Feb 2008 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Expressed in head muscle; head neurons; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C34D1.5a | |||||||
C34D1.5b | |||||||||
C34D1.5c | |||||||||
Corresponding_transcript | C34D1.5a.1 | ||||||||
C34D1.5b.1 | |||||||||
C34D1.5c.1 | |||||||||
Other_sequence | CBC08146_1 | ||||||||
Associated_feature (6) | |||||||||
Transcription_factor | WBTranscriptionFactor000225 | ||||||||
Experimental_info | RNAi_result | WBRNAi00115932 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041862 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011589 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00029515 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7465 | ||||||||
Expr16388 | |||||||||
Expr1010880 | |||||||||
Expr1033442 | |||||||||
Expr1145881 | |||||||||
Expr2018159 | |||||||||
Expr2036296 | |||||||||
Drives_construct | WBCnstr00012609 | ||||||||
WBCnstr00033372 | |||||||||
WBCnstr00042989 | |||||||||
Construct_product | WBCnstr00021776 | ||||||||
WBCnstr00033372 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (227) | |||||||||
Interaction (13) | |||||||||
Map_info | Map | V | Position | 5.04755 | Error | 0.021484 | |||
Positive | Positive_clone | C34D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00031111 | |||||||||
WBPaper00038487 | |||||||||
WBPaper00064871 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |