WormBase Tree Display for Gene: WBGene00007696
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| WBGene00007696 | SMap | S_parent | Sequence | C24F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tram-1 | Person_evidence | WBPerson295 | |||||
| WBPerson6230 | |||||||||
| Sequence_name | C24F3.1 | ||||||||
| Molecular_name | C24F3.1a | ||||||||
| C24F3.1a.1 | |||||||||
| CE18517 | |||||||||
| C24F3.1b | |||||||||
| CE18518 | |||||||||
| C24F3.1b.1 | |||||||||
| Other_name | CELE_C24F3.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tram-1 | ||||||||
| DB_info | Database | AceView | gene | 4K984 | |||||
| WormQTL | gene | WBGene00007696 | |||||||
| WormFlux | gene | WBGene00007696 | |||||||
| NDB | locus_tag | CELE_C24F3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007696|UniProtKB=Q9XXK7 | |||||||
| family | PTHR12371 | ||||||||
| NCBI | gene | 177902 | |||||||
| RefSeq | protein | NM_069467.7 | |||||||
| NM_069468.4 | |||||||||
| TrEMBL | UniProtAcc | Q9XXK7 | |||||||
| Q9U3P5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XXK7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | CGC_name | tram-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tram | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP4364 | ||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00002044 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00006505 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | tram-1 encodes the C. elegans ortholog of translocating chain-associated membrane protein 1; by homology, TRAM-1 is predicted to function in translocation of protein across the endoplasmic reticulum membrane; TRAM-1 localizes to the rough endoplasmic reticulum (ER) as well as to post-ER compartments such as the ciliary base. | Paper_evidence | WBPaper00033144 | |||||
| WBPaper00041921 | |||||||||
| WBPaper00038248 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 02 May 2014 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and protein insertion into ER membrane. Located in dendrite terminus; periciliary membrane compartment; and rough endoplasmic reticulum. Is an ortholog of human TRAM1 (translocation associated membrane protein 1); TRAM1L1 (translocation associated membrane protein 1 like 1); and TRAM2 (translocation associated membrane protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C24F3.1a | |||||||
| C24F3.1b | |||||||||
| Corresponding_transcript | C24F3.1a.1 | ||||||||
| C24F3.1b.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf668216 | ||||||||
| WBsf668217 | |||||||||
| WBsf230696 | |||||||||
| WBsf230697 | |||||||||
| WBsf230698 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041091 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029146 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011110 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023063 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12495 | ||||||||
| Expr1029018 | |||||||||
| Expr1033327 | |||||||||
| Expr1145128 | |||||||||
| Expr2017480 | |||||||||
| Expr2035619 | |||||||||
| Drives_construct | WBCnstr00019719 | ||||||||
| Construct_product | WBCnstr00017648 | ||||||||
| WBCnstr00018388 | |||||||||
| WBCnstr00019195 | |||||||||
| WBCnstr00019719 | |||||||||
| WBCnstr00022761 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (150) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | IV | Position | 4.56137 | |||||
| Positive | Positive_clone | C24F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
