WormBase Tree Display for Gene: WBGene00007696
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WBGene00007696 | SMap | S_parent | Sequence | C24F3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | tram-1 | Person_evidence | WBPerson295 | |||||
WBPerson6230 | |||||||||
Sequence_name | C24F3.1 | ||||||||
Molecular_name | C24F3.1a | ||||||||
C24F3.1a.1 | |||||||||
CE18517 | |||||||||
C24F3.1b | |||||||||
CE18518 | |||||||||
C24F3.1b.1 | |||||||||
Other_name | CELE_C24F3.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | tram-1 | ||||||||
DB_info | Database | AceView | gene | 4K984 | |||||
WormQTL | gene | WBGene00007696 | |||||||
WormFlux | gene | WBGene00007696 | |||||||
NDB | locus_tag | CELE_C24F3.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007696|UniProtKB=Q9XXK7 | |||||||
family | PTHR12371 | ||||||||
NCBI | gene | 177902 | |||||||
RefSeq | protein | NM_069467.7 | |||||||
NM_069468.4 | |||||||||
TrEMBL | UniProtAcc | Q9XXK7 | |||||||
Q9U3P5 | |||||||||
UniProt_GCRP | UniProtAcc | Q9XXK7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 04 Jun 2007 15:54:19 | WBPerson2970 | Name_change | CGC_name | tram-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tram | ||||||||
Allele (12) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Contained_in_operon | CEOP4364 | ||||||||
Ortholog (49) | |||||||||
Paralog | WBGene00002044 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00006505 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Structured_description | Concise_description | tram-1 encodes the C. elegans ortholog of translocating chain-associated membrane protein 1; by homology, TRAM-1 is predicted to function in translocation of protein across the endoplasmic reticulum membrane; TRAM-1 localizes to the rough endoplasmic reticulum (ER) as well as to post-ER compartments such as the ciliary base. | Paper_evidence | WBPaper00033144 | |||||
WBPaper00041921 | |||||||||
WBPaper00038248 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 02 May 2014 00:00:00 | ||||||||
Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and protein insertion into ER membrane. Located in dendrite terminus; periciliary membrane compartment; and rough endoplasmic reticulum. Is an ortholog of human TRAM1 (translocation associated membrane protein 1); TRAM1L1 (translocation associated membrane protein 1 like 1); and TRAM2 (translocation associated membrane protein 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C24F3.1a | |||||||
C24F3.1b | |||||||||
Corresponding_transcript | C24F3.1a.1 | ||||||||
C24F3.1b.1 | |||||||||
Other_sequence (21) | |||||||||
Associated_feature | WBsf668216 | ||||||||
WBsf668217 | |||||||||
WBsf230696 | |||||||||
WBsf230697 | |||||||||
WBsf230698 | |||||||||
Experimental_info | RNAi_result | WBRNAi00041091 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029146 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011110 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023063 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr12495 | ||||||||
Expr1029018 | |||||||||
Expr1033327 | |||||||||
Expr1145128 | |||||||||
Expr2017480 | |||||||||
Expr2035619 | |||||||||
Drives_construct | WBCnstr00019719 | ||||||||
Construct_product | WBCnstr00017648 | ||||||||
WBCnstr00018388 | |||||||||
WBCnstr00019195 | |||||||||
WBCnstr00019719 | |||||||||
WBCnstr00022761 | |||||||||
Microarray_results | SMD_C24F3.1 | ||||||||
173546_s_at | |||||||||
182499_s_at | |||||||||
A_12_P106734 | |||||||||
Aff_C24F3.1A | |||||||||
GPL13394_WBGene00007696 | |||||||||
GPL13914_C24F3.1 | |||||||||
GPL14144_C24F3.1b_534-593_0.911_15_C | |||||||||
GPL14144_C24F3.1b_878-937_0.935_2_B | |||||||||
GPL14144_C24F3.1b_978-1037_0.952_1_A | |||||||||
GPL19516_CGZ0005728 | |||||||||
GPL19516_CGZ0005729 | |||||||||
GPL21109_C24F3.1a | |||||||||
GPL3518_CE18517 | |||||||||
GPL8304_CE_WBGene00007696_A | |||||||||
GPL8304_CE_WBGene00007696_C | |||||||||
GPL8673_C24F3_1aP00157 | |||||||||
GPL8673_C24F3_1aP00475 | |||||||||
GPL8673_C24F3_1aP00815 | |||||||||
GPL8673_C24F3_1bP00158 | |||||||||
GPL8673_C24F3_1bP00482 | |||||||||
GPL8673_C24F3_1bP00820 | |||||||||
GPL9450_C24F3.1a | |||||||||
GPL9450_C24F3.1b | |||||||||
cea2.d.13994 | |||||||||
cea2.p.86601 | |||||||||
Expression_cluster (150) | |||||||||
Interaction (36) | |||||||||
Map_info | Map | IV | Position | 4.56137 | |||||
Positive | Positive_clone | C24F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |