WormBase Tree Display for Gene: WBGene00007657

WBGene00007657 SMap: S_parent: Sequence: C17H1
  Identity: Version: 3
    Name: CGC_name: pals-3 Person_evidence: WBPerson260
      Sequence_name: C17H1.4
      Molecular_name: C17H1.4a
        WP:CE39561
        CE39561
        C17H1.4b
        C17H1.4a.1
      Other_name: CELE_C17H1.4 Accession_evidence: NDB BX284601
      Public_name: pals-3
    DB_info: Database: AceView gene C17H1.4
            1N700
        WormQTL gene WBGene00007657
        WormFlux gene WBGene00007657
        NDB locus_tag CELE_C17H1.4
        NCBI gene 173179
        RefSeq mRNA NM_060895.2
          protein NP_493296.2
            NR_132565.1
            NM_060895.4
        UniProt UniProtAcc O45255
        RNAcentral URSid URS0000843376
        TrEMBL UniProtAcc O45255
        UniProt_GCRP UniProtAcc O45255
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Jan 2006 09:36:01 WBPerson1983 Event: Split_into: WBGene00044709
        3 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-3
      Split_into: WBGene00044709
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (194)
    RNASeq_FPKM (74)
    Ortholog: WBGene00271585 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CSP26.g4056 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP40.g862 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_V.g18706 Caenorhabditis nigoni From_analysis: WormBase-Compara
      GCK72_018441 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g2651 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00007654 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00007659 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007660 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00012505 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00007131 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007132 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007134 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in excretory cell and neurons based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; skn-1; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including methylmercuric chloride; Mercuric Chloride; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C17H1.4a
    Corresponding_CDS_history: C17H1.4:wp153
    Corresponding_transcript: C17H1.4b
      C17H1.4a.1
    Other_sequence: DI01433
      TX01836
      FC811821.1
  Experimental_info: RNAi_result: WBRNAi00029027 Inferred_automatically: RNAi_primary
      WBRNAi00070111 Inferred_automatically: RNAi_primary
      WBRNAi00002981 Inferred_automatically: RNAi_primary
      WBRNAi00040847 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1010289
      Expr1144894
    Drives_construct: WBCnstr00033575
    Construct_product: WBCnstr00033575
    Microarray_results (23)
    Expression_cluster: WBPaper00032425:up_in_lin-35
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044316:CH3HgCl_2.0uM_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045401:N.parisii_8h_upregulated
      WBPaper00045401:N.parisii_16h_upregulated
      WBPaper00045401:N.parisii_30h_upregulated
      WBPaper00045401:N.parisii_40h_upregulated
      WBPaper00045401:N.parisii_64h_upregulated
      WBPaper00045918:96h_infection_recovery_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049484:elt-2(RNAi)_upregulated_L4
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050193:dpy-27(RNAi)_upregulated_L1
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050504:hrp-2(RNAi)_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051137:N.parisii-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_N2
      WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
      WBPaper00051371:Orsay-virus-infection_upregulated_rde-1(ne219)
      WBPaper00051558:aging_regulated
      WBPaper00053020:OrsayVirus-infection_upregulated
      WBPaper00053020:OrsayVirus-infection_upregulated_microarray
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053657:JU2519_M.humicola-infection_24hr
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058711:wdr-5(ok1417)_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059426:SiO2-nanoparticles_downregulated
      WBPaper00059537:ngn-1(ok2200)_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00060871:M.humicola-infection_12h_regulated
      WBPaper00060871:M.humicola-infection_24h_regulated
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
      WBPaper00061040:FW1256_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061319:pnp-1(jy90)_upregulated
      WBPaper00061319:pnp-1(jy121)_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-15B(we23)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-37(n758)_upregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062354:H.zoospora_12h_regulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064532:pals-25(jy111)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065086:JU1400_N.ausubeli_regulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:JU1400_N.ironsii_regulated
      WBPaper00065086:JU1400_N.parisii_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065086:N2_N.ferruginous_regulated
      WBPaper00065086:N2_N.ironsii_regulated
      WBPaper00065086:N2_N.parisii_regulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065995:M.humicola-extract_downregulated_N2
      WBPaper00066204:CdCl2_upregulated_mRNA
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_21
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_H
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00045294:50uM_TBBP_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
    Interaction: WBInteraction000139168
      WBInteraction000143025
      WBInteraction000182230
      WBInteraction000183290
      WBInteraction000184994
      WBInteraction000185204
      WBInteraction000194618
      WBInteraction000197342
      WBInteraction000203169
      WBInteraction000206657
      WBInteraction000212762
      WBInteraction000215363
      WBInteraction000223391
      WBInteraction000224638
      WBInteraction000225570
      WBInteraction000229864
      WBInteraction000231337
      WBInteraction000237615
      WBInteraction000239176
      WBInteraction000249087
      WBInteraction000252170
      WBInteraction000260376
      WBInteraction000263266
      WBInteraction000266916
      WBInteraction000268358
      WBInteraction000269847
      WBInteraction000284729
      WBInteraction000304691
      WBInteraction000305587
      WBInteraction000306565
      WBInteraction000322236
      WBInteraction000325794
      WBInteraction000328329
      WBInteraction000328468
      WBInteraction000330268
      WBInteraction000332151
      WBInteraction000333912
      WBInteraction000335834
      WBInteraction000343469
      WBInteraction000346230
      WBInteraction000346847
      WBInteraction000347915
      WBInteraction000364330
      WBInteraction000369955
      WBInteraction000376022
      WBInteraction000378598
      WBInteraction000385064
      WBInteraction000394525
      WBInteraction000395370
      WBInteraction000405943
      WBInteraction000407035
      WBInteraction000413585
      WBInteraction000413643
      WBInteraction000413817
      WBInteraction000418379
      WBInteraction000418854
      WBInteraction000427263
      WBInteraction000434301
      WBInteraction000439361
      WBInteraction000449019
      WBInteraction000450666
      WBInteraction000458889
  Map_info: Map: I Position: 17.2197
    Positive: Positive_clone: C17H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030811
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene