WormBase Tree Display for Gene: WBGene00007299

WBGene00007299 SMap: S_parent: Sequence: C04F12
  Identity: Version: 1
    Name: Sequence_name: C04F12.5
      Molecular_name: C04F12.5
        C04F12.5.1
        CE19678
        C04F12.5.2
      Other_name: CELE_C04F12.5 Accession_evidence: NDB BX284601
      Public_name: C04F12.5
    DB_info: Database: AceView gene 1K264
        WormQTL gene WBGene00007299
        WormFlux gene WBGene00007299
        NDB locus_tag CELE_C04F12.5
        Panther gene CAEEL|WormBase=WBGene00007299|UniProtKB=Q9XVE8
          family PTHR34721
        NCBI gene 182226
        RefSeq protein NM_060176.4
        TREEFAM TREEFAM_ID TF322207
        TrEMBL UniProtAcc Q9XVE8
        UniProt_GCRP UniProtAcc Q9XVE8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499739
      WBVar00662291
      WBVar00662292
      WBVar00662293
      WBVar00662294
      WBVar01910162
      WBVar00250129
      WBVar01499786
      WBVar01499054
      WBVar01498959
    RNASeq_FPKM (74)
    Ortholog (18)
    Paralog: WBGene00010236 Caenorhabditis elegans From_analysis: Panther
      WBGene00018874 Caenorhabditis elegans From_analysis: Panther
      WBGene00010239 Caenorhabditis elegans From_analysis: Panther
      WBGene00020995 Caenorhabditis elegans From_analysis: Panther
      WBGene00017296 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00044446 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00018115 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00045250 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00014125 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in several structures, including germ line; germline precursor cell; intestine; neurons; and ventral nerve cord based on Chronogram; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; RNA-seq; and tiling array studies. Is affected by thirteen chemicals including rotenone; D-glucose; and stavudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C04F12.5
    Corresponding_transcript: C04F12.5.1
      C04F12.5.2
    Other_sequence: CJC03914_1
      CJC00266_1
      CR02252
      CBC00815_1
    Associated_feature: WBsf984776
      WBsf984777
      WBsf220130
  Experimental_info: RNAi_result: WBRNAi00028442 Inferred_automatically: RNAi_primary
      WBRNAi00061980 Inferred_automatically: RNAi_primary
      WBRNAi00039632 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram296
      Expr5145
      Expr1025318
      Expr1033147
      Expr1143728
      Expr2000412
      Expr2018636
    Drives_construct: WBCnstr00003219
      WBCnstr00033849
    Construct_product: WBCnstr00033849
    Microarray_results (17)
    Expression_cluster: WBPaper00029359_1280
      WBPaper00029359_1444
      WBPaper00029359_1504
      WBPaper00029359_1604
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037946:LIN-39_interacting
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:BAG-neuron_embryo_enriched
      WBPaper00037950:BAG-neuron_embryo_SelectivelyEnriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_larva_enriched
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059471:EGL-43_interacting
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00059763:neuron_expressed
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:AIZ
      WBPaper00061340:IL1
      WBPaper00061340:OLL
      WBPaper00061340:OLQ
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00061651:ALM_enriched
      WBPaper00061651:CEP_enriched
      WBPaper00061651:DB01_enriched
      WBPaper00061651:PLM_enriched
      WBPaper00061651:PVM_enriched
      WBPaper00061651:VB01_enriched
      WBPaper00061651:VD_DD_enriched
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062587:lsl-1(ljm1)_downregulated
      WBPaper00062587:lsl-1(tm4769)_downregulated
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064727:daf-2(e1370)_downregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065581:hpk-1(pk1393)_downregulated
      WBPaper00065841:10_0
      WBPaper00065841:20_0
      WBPaper00065841:20_1
      WBPaper00065841:20_2
      WBPaper00065841:44_0
      WBPaper00065841:52_0
      WBPaper00065841:54_0
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:sin-3(tm1276)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_3
      WBPaper00025032:cluster_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031060:2-deoxy-D-glucose_upregulated
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00036286:Pattern_F
      WBPaper00038172:aak-2overexpression_down_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      [cgc5376]:let-60(G12V)-regulated_genes
      [cgc5767]:cluster_22
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_C
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000228436
      WBInteraction000229485
      WBInteraction000258849
      WBInteraction000353512
      WBInteraction000370111
      WBInteraction000398953
      WBInteraction000412788
      WBInteraction000457146
  Map_info: Positive: Positive_clone: C04F12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 3.85514
  Method: Gene