WormBase Tree Display for Gene: WBGene00006626
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| WBGene00006626 | Evidence | Person_evidence | WBPerson1159 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F10G7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tsn-1 | Person_evidence | WBPerson490 | |||||
| Sequence_name | F10G7.2 | ||||||||
| Molecular_name | F10G7.2 | ||||||||
| F10G7.2.1 | |||||||||
| CE02626 | |||||||||
| Other_name | CELE_F10G7.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | tsn-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsn | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00040020 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP2132 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | tsn-1 encodes the C. elegans ortholog of Tudor-SN (tudor staphylococcal nuclease); TSN-1 is a component of the RNA-induced silencing complex (RISC) and its activity is required for proper function of the let-7 miRNA in vivo; TSN-1 is found in both the nucleus and the cytosol. | Paper_evidence | WBPaper00006077 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Feb 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity and nuclease activity. Involved in miRNA-mediated post-transcriptional gene silencing. Located in cytosol and nucleus. Part of RISC complex. Expressed in head and tail. Is an ortholog of human SND1 (staphylococcal nuclease and tudor domain containing 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F10G7.2 | |||||||
| Corresponding_transcript | F10G7.2.1 | ||||||||
| Other_sequence (77) | |||||||||
| Associated_feature | WBsf644124 | ||||||||
| WBsf657518 | |||||||||
| WBsf657519 | |||||||||
| WBsf221159 | |||||||||
| WBsf221160 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram2078 | ||||||||
| Expr5726 | |||||||||
| Expr5727 | |||||||||
| Expr1021187 | |||||||||
| Expr1032752 | |||||||||
| Expr1148253 | |||||||||
| Expr2017538 | |||||||||
| Expr2035676 | |||||||||
| Drives_construct | WBCnstr00002282 | ||||||||
| WBCnstr00034258 | |||||||||
| Construct_product | WBCnstr00034258 | ||||||||
| Antibody | WBAntibody00001276 | ||||||||
| WBAntibody00001452 | |||||||||
| WBAntibody00001634 | |||||||||
| WBAntibody00002675 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (218) | |||||||||
| Interaction (86) | |||||||||
| WBProcess | WBbiopr:00000057 | ||||||||
| Map_info | Map | II | Position | -3.14061 | Error | 0.006098 | |||
| Positive | Positive_clone | F10G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
