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WormBase Tree Display for Gene: WBGene00006626

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Name Class

WBGene00006626EvidencePerson_evidenceWBPerson1159
SMapS_parentSequenceF10G7
IdentityVersion1
NameCGC_nametsn-1Person_evidenceWBPerson490
Sequence_nameF10G7.2
Molecular_nameF10G7.2
F10G7.2.1
CE02626
Other_nameCELE_F10G7.2Accession_evidenceNDBBX284602
Public_nametsn-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtsn
Allele (62)
StrainWBStrain00040020
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP2132
OrthologWBGene00069831Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00027000Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162998Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00145381Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00092442Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00123251Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00223543Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12646Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g9129Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g399Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8036Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20054Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13048Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g17853Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12410Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16135Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g336Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3190Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_29528.g27752Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tsn-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold492.g2111Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01632.g22195Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22709Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003810Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03160Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03164Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09275Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21564Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20224000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4303Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247901Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267057Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294859Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0035121Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-3124Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:30646Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1929266Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:631340Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptiontsn-1 encodes the C. elegans ortholog of Tudor-SN (tudor staphylococcal nuclease); TSN-1 is a component of the RNA-induced silencing complex (RISC) and its activity is required for proper function of the let-7 miRNA in vivo; TSN-1 is found in both the nucleus and the cytosol.Paper_evidenceWBPaper00006077
Curator_confirmedWBPerson1843
Date_last_updated13 Feb 2007 00:00:00
Automated_descriptionPredicted to enable RNA binding activity and nuclease activity. Involved in miRNA-mediated post-transcriptional gene silencing. Located in cytosol and nucleus. Part of RISC complex. Expressed in head and tail. Is an ortholog of human SND1 (staphylococcal nuclease and tudor domain containing 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF10G7.2
Corresponding_transcriptF10G7.2.1
Other_sequence (77)
Associated_featureWBsf644124
WBsf657518
WBsf657519
WBsf221159
WBsf221160
Experimental_infoRNAi_result (11)
Expr_patternChronogram2078
Expr5726
Expr5727
Expr1021187
Expr1032752
Expr1148253
Expr2017538
Expr2035676
Drives_constructWBCnstr00002282
WBCnstr00034258
Construct_productWBCnstr00034258
AntibodyWBAntibody00001276
WBAntibody00001452
WBAntibody00001634
WBAntibody00002675
Microarray_results (24)
Expression_cluster (218)
Interaction (86)
WBProcessWBbiopr:00000057
Map_infoMapIIPosition-3.14061Error0.006098
PositivePositive_cloneF10G7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene