WormBase Tree Display for Gene: WBGene00006543
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WBGene00006543 | SMap | S_parent | Sequence | F21H11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | tbx-2 | Person_evidence | WBPerson107 | |||||
Sequence_name | F21H11.3 | ||||||||
Molecular_name | F21H11.3 | ||||||||
F21H11.3.1 | |||||||||
CE01245 | |||||||||
Other_name | sdf-13 | ||||||||
mab-22 | Person_evidence | WBPerson261 | |||||||
CELE_F21H11.3 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | tbx-2 | ||||||||
DB_info | Database | AceView | gene | 3G222 | |||||
WormQTL | gene | WBGene00006543 | |||||||
WormFlux | gene | WBGene00006543 | |||||||
NDB | locus_tag | CELE_F21H11.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006543|UniProtKB=Q19691 | |||||||
family | PTHR11267 | ||||||||
NCBI | gene | 175698 | |||||||
RefSeq | protein | NM_001382860.2 | |||||||
SwissProt | UniProtAcc | Q19691 | |||||||
UniProt_GCRP | UniProtAcc | Q19691 | |||||||
OMIM | gene | 600747 | |||||||
601621 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 31 Jul 2013 13:40:41 | WBPerson2970 | Event | Acquires_merge | WBGene00003113 | ||||
Name_change | Other_name | mab-22 | |||||||
Acquires_merge | WBGene00003113 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tbx | ||||||||
Allele (60) | |||||||||
Legacy_information | [C.elegansII] NMK. Similarity to mouse Tbx genes, closest to mouse Tbx2 (70% identity in T box domain). (F21H11.3)[Agulnik et al. 1995] | ||||||||
[C.elegansII] bx59ts : extensive loss of rays at 25C, not 15C. Divisions appear normal, possible ray assembly defect. NA1. [EM] | |||||||||
Strain | WBStrain00003711 | ||||||||
WBStrain00022191 | |||||||||
WBStrain00022192 | |||||||||
WBStrain00035675 | |||||||||
WBStrain00007174 | |||||||||
WBStrain00049269 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (35) | |||||||||
Ortholog (42) | |||||||||
Paralog (21) | |||||||||
Structured_description | Concise_description | tbx-2 encodes one of 21 C. elegans T-box transcription factors; during development, tbx-2 activity is required for normal adaptation, but not chemotaxis, to attractive odorants sensed by the AWC amphid neurons; tbx-2 is required redundantly with unc-3 and unc-31 for negative regulation of dauer formation, and large-scale RNAi screens reveal an essential role for tbx-2 in early larval development, normal rates of postembryonic growth, and locomotory behavior; tbx-2 is also required along with pha-4 for embryonic precursor cells to adopt a pharyngeal muscle fate; TBX-2 and PHA-4 are mutually dependant on each other to maintain expression implicating them in a regulatory loop that controls commitment to the pharyngeal muscle fate; yeast two-hybrid assays have identified that TBX-2 interacts with UBC-9 (E2 SUMO conjugating enzyme) and GEI-17 (E3 SUMO ligase); based on the two-hybrid interaction and the similar pharyngeal muscle phenotype of ubc-9, it is likely that protein sumoylation is required for precursor-cell derived pharyngeal muscle development; antibodies to TBX-2 detect expression in the cytoplasm of amphid and pharyngeal neurons in larvae and adults, suggesting that TBX-2 function may be controlled, in part, by regulation of its subcellular localization; in addition, in situ hybridization studies indicate that tbx-2 mRNA is expressed during mid-embryogenesis; tbx-2 expression in the AWC amphid neurons is sufficient to rescue the olfactory adaptation defects seen in tbx-2 mutant animals. | Paper_evidence | WBPaper00002132 | |||||
WBPaper00002863 | |||||||||
WBPaper00004103 | |||||||||
WBPaper00005423 | |||||||||
WBPaper00006381 | |||||||||
WBPaper00025054 | |||||||||
WBPaper00027631 | |||||||||
WBPaper00028546 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson324 | |||||||||
WBPerson1823 | |||||||||
WBPerson567 | |||||||||
Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
Automated_description | Enables DNA-binding transcription repressor activity; core promoter sequence-specific DNA binding activity; and enzyme binding activity. Involved in several processes, including muscle structure development; neuron migration; and olfactory behavior. Located in cytoplasm and nucleus. Expressed in amphid neurons; body wall musculature; head neurons; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including gastrointestinal system cancer (multiple); ulnar-mammary syndrome; and vertebral anomalies and variable endocrine and T-cell dysfunction. Is an ortholog of human TBX2 (T-box transcription factor 2) and TBX3 (T-box transcription factor 3). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11602) | ||||
DOID:0060614 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11602) | ||||||
DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11602) | ||||||
DOID:1882 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11597) | ||||||
DOID:1681 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11597) | ||||||
DOID:2394 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11602) | ||||||
DOID:0070345 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11597) | ||||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11602) | ||||||
Molecular_info | Corresponding_CDS | F21H11.3 | |||||||
Corresponding_transcript | F21H11.3.1 | ||||||||
Other_sequence (16) | |||||||||
Associated_feature (13) | |||||||||
Gene_product_binds | WBsf977981 | ||||||||
WBsf977982 | |||||||||
WBsf977983 | |||||||||
Transcription_factor | WBTranscriptionFactor000208 | ||||||||
Experimental_info | RNAi_result (16) | ||||||||
Expr_pattern (16) | |||||||||
Drives_construct (12) | |||||||||
Construct_product | WBCnstr00011882 | ||||||||
WBCnstr00011883 | |||||||||
WBCnstr00034310 | |||||||||
Regulate_expr_cluster | WBPaper00042274:tbx-2(bx59)_downregulated | ||||||||
WBPaper00042274:tbx-2(bx59)_upregulated | |||||||||
Antibody | WBAntibody00000713 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (199) | |||||||||
Interaction (62) | |||||||||
Anatomy_function | WBbtf0263 | ||||||||
WBbtf0264 | |||||||||
Map_info | Map | III | Position | -2.08974 | Error | 0.015753 | |||
Positive | Positive_clone | F21H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4725 | |||||||
Pseudo_map_position | |||||||||
Reference (58) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |