WormBase Tree Display for Gene: WBGene00006495

WBGene00006495 SMap: S_parent: Sequence: F31D5
  Identity: Version: 3
    Name: CGC_name: cpna-1 Person_evidence: WBPerson56
      Sequence_name: F31D5.3
      Molecular_name: F31D5.3a
        F31D5.3a.1
        CE19827
        F31D5.3b
        CE19828
        F31D5.3c
        CE31797
        F31D5.3b.1
        F31D5.3c.1
      Other_name: tag-149 Person_evidence: WBPerson201
        CELE_F31D5.3 Accession_evidence: NDB BX284602
      Public_name: cpna-1
    DB_info: Database: AceView gene 2E497
        WormQTL gene WBGene00006495
        WormFlux gene WBGene00006495
        NDB locus_tag CELE_F31D5.3
        Panther gene CAEEL|WormBase=WBGene00006495|UniProtKB=H2KYS8
          family PTHR45751
        NCBI gene 173753
        RefSeq protein NM_062335.8
            NM_062336.6
            NM_182185.6
        SwissProt UniProtAcc H2KYS8
        UniProt_GCRP UniProtAcc H2KYS8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 28 May 2004 14:11:43 WBPerson1971 Event: Acquires_merge: WBGene00017946
        3 22 Apr 2009 15:13:14 WBPerson9133 Name_change: CGC_name: cpna-1
                Other_name: tag-149
      Acquires_merge: WBGene00017946
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cpna
    Allele (353)
    Strain: WBStrain00035837
      WBStrain00035946
    RNASeq_FPKM (74)
    GO_annotation (16)
    Ortholog (61)
    Paralog: WBGene00007044 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00001577 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006441 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007221 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012128 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015061 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enables phosphatase binding activity and protein-macromolecule adaptor activity. Involved in positive regulation of sarcomere organization. Located in M band and striated muscle dense body. Expressed in body wall musculature. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F31D5.3a
      F31D5.3b
      F31D5.3c
    Corresponding_CDS_history: F31D5.3d:wp274
    Corresponding_transcript: F31D5.3a.1
      F31D5.3b.1
      F31D5.3c.1
    Other_sequence (45)
    Associated_feature (21)
  Experimental_info: RNAi_result: WBRNAi00081189 Inferred_automatically: RNAi_primary
      WBRNAi00014147 Inferred_automatically: RNAi_primary
      WBRNAi00001543 Inferred_automatically: RNAi_primary
      WBRNAi00046011 Inferred_automatically: RNAi_primary
      WBRNAi00046010 Inferred_automatically: RNAi_primary
      WBRNAi00081193 Inferred_automatically: RNAi_primary
      WBRNAi00092179 Inferred_automatically: RNAi_primary
      WBRNAi00000424 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10608
      Expr1028121
      Expr1032658
      Expr1149909
      Expr2010497
      Expr2028737
    Drives_construct: WBCnstr00037895
    Construct_product: WBCnstr00037895
    Antibody: WBAntibody00002400
      WBAntibody00002541
    Microarray_results (38)
    Expression_cluster: WBPaper00027057:DCR-1_interacting_adult
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:bodywall-muscle_CoreEnriched
      WBPaper00037950:bodywall-muscle_embryo_enriched
      WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040209:B.thuringiensis_upregulated_MY18
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045417:128Q-huntingtin_upreglated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Spermatogenic
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00046121:mesoderm_unique
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00051265:F4_hrde-1(tm1200)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057006:DietaryRestriction_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_protein
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061340:BWM_anterior
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:myo-3-Y71G12B.11_22540
      WBPaper00061818:ELKS-1_interacting
      WBPaper00062156:jmjd-5(zr1234)_downregulated_germline
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064992:Capsaicin_upregulated
      WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
      WBPaper00065149:lin-52(n771)_downregulated
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065841:1_1
      WBPaper00065841:4_0
      WBPaper00065841:4_1
      WBPaper00065841:4_2
      WBPaper00065841:7_0
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:7_3
      WBPaper00065841:7_4
      WBPaper00065841:32_0
      WBPaper00065841:38_1
      WBPaper00065841:38_3
      WBPaper00065841:44_0
      WBPaper00065841:102_0
      WBPaper00065841:111_0
      WBPaper00065841:143_0
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4489_group_19
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031850:mdt-15(RNAi)_downregulated
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040426:CYD-1_CDK-4_downregulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040963:Q200_up
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:Cluster_C
    Interaction (48)
  Map_info: Map: II Position: -5.2629 Error: 0.066146
    Positive: Positive_clone: F31D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4377
    Pseudo_map_position
  Reference: WBPaper00034337
    WBPaper00034662
    WBPaper00038626
    WBPaper00041771
    WBPaper00041875
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene