WormBase Tree Display for Gene: WBGene00006424
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| WBGene00006424 | SMap | S_parent | Sequence | F49E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ctbp-1 | Person_evidence | WBPerson2627 | |||||
| Sequence_name | F49E10.5 | ||||||||
| Molecular_name | F49E10.5a | ||||||||
| F49E10.5a.1 | |||||||||
| CE29966 | |||||||||
| F49E10.5b | |||||||||
| CE47412 | |||||||||
| F49E10.5b.1 | |||||||||
| Other_name | tag-45 | Person_evidence | WBPerson201 | ||||||
| CELE_F49E10.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ctbp-1 | ||||||||
| DB_info | Database | AceView | gene | XG491 | |||||
| WormQTL | gene | WBGene00006424 | |||||||
| WormFlux | gene | WBGene00006424 | |||||||
| NDB | locus_tag | CELE_F49E10.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006424|UniProtKB=Q20595 | |||||||
| family | PTHR46029 | ||||||||
| NCBI | gene | 180853 | |||||||
| RefSeq | protein | NM_001270102.3 | |||||||
| NM_001270101.4 | |||||||||
| SwissProt | UniProtAcc | Q20595 | |||||||
| UniProt_GCRP | UniProtAcc | Q20595 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Oct 2006 15:31:09 | WBPerson2970 | Event | Acquires_merge | WBGene00018642 | ||||
| 3 | 16 Oct 2006 14:08:57 | WBPerson2970 | Name_change | CGC_name | ctbp-1 | ||||
| Other_name | tag-45 | ||||||||
| Acquires_merge | WBGene00018642 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ctbp | ||||||||
| Allele (175) | |||||||||
| Possibly_affected_by | WBVar02157252 | ||||||||
| Strain | WBStrain00031454 | ||||||||
| WBStrain00030103 | |||||||||
| WBStrain00047496 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00007836 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Provisional_description | tag-45 encodes a D-isomer specific 2-hydroxyacid dehydrogenase. | Curator_confirmed | WBPerson48 | |||||
| Concise_description | tag-45 encodes a D-isomer specific 2-hydroxyacid dehydrogenase. | ||||||||
| Automated_description | Enables RNA polymerase II-specific DNA-binding transcription factor binding activity and transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in hypodermis and nervous system. Used to study alcohol use disorder. Is an ortholog of human CTBP1 (C-terminal binding protein 1) and CTBP2 (C-terminal binding protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00041098 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 21 May 2019 00:00:00 | ||||||||
| Models_disease_asserted | WBDOannot00000674 | ||||||||
| Molecular_info | Corresponding_CDS | F49E10.5a | |||||||
| F49E10.5b | |||||||||
| Corresponding_transcript | F49E10.5a.1 | ||||||||
| F49E10.5b.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature (20) | |||||||||
| Transcription_factor | WBTranscriptionFactor000823 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00015304 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103373 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047836 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015305 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047835 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11825 | ||||||||
| Expr12091 | |||||||||
| Expr12092 | |||||||||
| Expr12541 | |||||||||
| Expr1025813 | |||||||||
| Expr1032609 | |||||||||
| Expr1151670 | |||||||||
| Expr2010565 | |||||||||
| Expr2028805 | |||||||||
| Drives_construct | WBCnstr00019349 | ||||||||
| WBCnstr00020016 | |||||||||
| WBCnstr00021742 | |||||||||
| WBCnstr00042043 | |||||||||
| WBCnstr00042044 | |||||||||
| Construct_product | WBCnstr00019349 | ||||||||
| WBCnstr00020016 | |||||||||
| WBCnstr00020017 | |||||||||
| WBCnstr00021150 | |||||||||
| WBCnstr00021742 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction (71) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | X | Position | -4.16195 | Error | 0.01114 | |||
| Positive | Positive_clone | F49E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (26) | |||||||||
| Remark | Killed due to lack of data | Curator_confirmed | WBPerson2970 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
