WormBase Tree Display for Gene: WBGene00007836
expand all nodes | collapse all nodes | view schema
| WBGene00007836 | SMap | S_parent | Sequence | C31C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | phdh-1 | Person_evidence | WBPerson555 | |||||
| Sequence_name | C31C9.2 | ||||||||
| Molecular_name | C31C9.2a | ||||||||
| C31C9.2a.1 | |||||||||
| CE08497 | |||||||||
| C31C9.2b | |||||||||
| CE54570 | |||||||||
| C31C9.2b.1 | |||||||||
| Other_name | CELE_C31C9.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | phdh-1 | ||||||||
| DB_info | Database | AceView | gene | 2N928 | |||||
| WormQTL | gene | WBGene00007836 | |||||||
| WormFlux | gene | WBGene00007836 | |||||||
| NDB | locus_tag | CELE_C31C9.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007836|UniProtKB=O17626 | |||||||
| family | PTHR42938 | ||||||||
| NCBI | gene | 175012 | |||||||
| RefSeq | protein | NM_001421351.1 | |||||||
| NM_064467.6 | |||||||||
| TrEMBL | UniProtAcc | O17626 | |||||||
| UniProt_GCRP | UniProtAcc | O17626 | |||||||
| OMIM | gene | 606879 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 May 2023 12:43:53 | WBPerson51134 | Name_change | CGC_name | phdh-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | phdh | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00002470 | ||||||||
| WBStrain00002285 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00030184 | ||||||||
| 00030185 | |||||||||
| 00115863 | |||||||||
| 00115864 | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00006424 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | C31C9.2 is orthologous to the human gene PHOSPHOGLYCERATE DEHYDROGENASE (PHGDH; OMIM:606879), which when mutated leads to phosphoglycerate dehydrogenase deficiency. | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson1823 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphoglycerate dehydrogenase activity. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 1 and PHGDH deficiency. Is an ortholog of human PHGDH (phosphoglycerate dehydrogenase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050722 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8923) | ||||
| DOID:0080076 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8923) | ||||||
| DOID:9252 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8923) | ||||||
| Molecular_info | Corresponding_CDS | C31C9.2a | |||||||
| C31C9.2b | |||||||||
| Corresponding_transcript | C31C9.2a.1 | ||||||||
| C31C9.2b.1 | |||||||||
| Other_sequence (102) | |||||||||
| Associated_feature | WBsf650701 | ||||||||
| WBsf666326 | |||||||||
| WBsf666327 | |||||||||
| WBsf990477 | |||||||||
| WBsf1013672 | |||||||||
| WBsf224201 | |||||||||
| WBsf224202 | |||||||||
| WBsf224203 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000446 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00041604 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029382 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022541 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011432 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1157 | ||||||||
| Chronogram1714 | |||||||||
| Expr5396 | |||||||||
| Expr5397 | |||||||||
| Expr1013361 | |||||||||
| Expr1033396 | |||||||||
| Expr1145629 | |||||||||
| Expr2001274 | |||||||||
| Expr2019496 | |||||||||
| Drives_construct | WBCnstr00002985 | ||||||||
| WBCnstr00004485 | |||||||||
| WBCnstr00033446 | |||||||||
| Construct_product | WBCnstr00033446 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (241) | |||||||||
| Interaction (78) | |||||||||
| Map_info | Map | II | Position | 18.9113 | |||||
| Positive | Positive_clone | C31C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056038 | |||||||||
| WBPaper00062642 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
