WormBase Tree Display for Gene: WBGene00006363
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| WBGene00006363 | Evidence | Paper_evidence | WBPaper00005543 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F35D2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | syd-1 | Person_evidence | WBPerson105 | |||||
| WBPerson293 | |||||||||
| Sequence_name | F35D2.5 | ||||||||
| Molecular_name | F35D2.5a | ||||||||
| F35D2.5a.1 | |||||||||
| CE33391 | |||||||||
| F35D2.5c | |||||||||
| CE33392 | |||||||||
| F35D2.5c.1 | |||||||||
| F35D2.5c.2 | |||||||||
| Other_name | CELE_F35D2.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | syd-1 | ||||||||
| DB_info | Database | AceView | gene | 2H876 | |||||
| WormQTL | gene | WBGene00006363 | |||||||
| WormFlux | gene | WBGene00006363 | |||||||
| NDB | locus_tag | CELE_F35D2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006363|UniProtKB=Q86NH1 | |||||||
| family | PTHR46150 | ||||||||
| NCBI | gene | 174230 | |||||||
| RefSeq | protein | NM_001026975.4 | |||||||
| NM_001383891.2 | |||||||||
| SwissProt | UniProtAcc | Q86NH1 | |||||||
| TREEFAM | TREEFAM_ID | TF323458 | |||||||
| UniProt_GCRP | UniProtAcc | Q86NH1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syd | ||||||||
| Allele | WBVar00092787 | Inferred_automatically | From strain object: RB1389 | ||||||
| WBVar00088140 | |||||||||
| WBVar01499702 | |||||||||
| WBVar00744955 | |||||||||
| WBVar00744956 | |||||||||
| WBVar00744957 | |||||||||
| WBVar00744958 | |||||||||
| WBVar00744959 | |||||||||
| WBVar00744960 | |||||||||
| WBVar00744961 | |||||||||
| WBVar00744962 | |||||||||
| WBVar00744963 | |||||||||
| WBVar00744964 | |||||||||
| WBVar00744965 | |||||||||
| WBVar00744966 | |||||||||
| WBVar00744967 | |||||||||
| WBVar00744968 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00744969 | |||||||||
| WBVar00088136 | |||||||||
| WBVar00744970 | |||||||||
| WBVar00744971 | |||||||||
| WBVar01474118 | |||||||||
| WBVar00744972 | |||||||||
| WBVar00744973 | |||||||||
| WBVar01241581 | |||||||||
| WBVar00744974 | |||||||||
| WBVar00744975 | |||||||||
| WBVar01241587 | |||||||||
| WBVar00744976 | |||||||||
| WBVar00744977 | |||||||||
| WBVar00744978 | |||||||||
| WBVar01949160 | |||||||||
| WBVar00744979 | |||||||||
| WBVar01949161 | |||||||||
| WBVar00744980 | |||||||||
| WBVar00744981 | |||||||||
| WBVar00744982 | |||||||||
| WBVar00744983 | |||||||||
| WBVar00744984 | |||||||||
| WBVar00088157 | |||||||||
| WBVar00744985 | |||||||||
| WBVar00744986 | |||||||||
| WBVar02002842 | |||||||||
| WBVar00744987 | |||||||||
| WBVar02002843 | |||||||||
| WBVar00744988 | |||||||||
| WBVar00744989 | |||||||||
| WBVar00744990 | |||||||||
| WBVar00744991 | |||||||||
| WBVar00744992 | |||||||||
| WBVar00744993 | |||||||||
| WBVar00744994 | |||||||||
| WBVar01720328 | |||||||||
| WBVar00744995 | |||||||||
| WBVar02018057 | |||||||||
| WBVar00744996 | |||||||||
| WBVar02018058 | |||||||||
| WBVar00744997 | |||||||||
| WBVar00744998 | |||||||||
| WBVar00744999 | |||||||||
| WBVar00745000 | |||||||||
| WBVar00745001 | |||||||||
| WBVar00745002 | |||||||||
| WBVar00259529 | |||||||||
| WBVar00259531 | |||||||||
| WBVar00259532 | |||||||||
| WBVar01375545 | |||||||||
| WBVar00173489 | |||||||||
| WBVar02130259 | |||||||||
| WBVar00173490 | |||||||||
| WBVar02130260 | |||||||||
| WBVar00225827 | |||||||||
| WBVar02151132 | |||||||||
| WBVar00225828 | |||||||||
| WBVar00370419 | |||||||||
| WBVar00370420 | |||||||||
| WBVar00370421 | |||||||||
| WBVar00370422 | |||||||||
| WBVar00370423 | |||||||||
| WBVar01438509 | |||||||||
| WBVar00370424 | |||||||||
| WBVar00370425 | |||||||||
| WBVar00370426 | |||||||||
| WBVar00146109 | |||||||||
| WBVar00370427 | |||||||||
| WBVar00370428 | |||||||||
| WBVar00370429 | |||||||||
| WBVar00370430 | |||||||||
| WBVar00370431 | |||||||||
| WBVar00370432 | |||||||||
| WBVar02150213 | |||||||||
| WBVar00370433 | |||||||||
| WBVar00370434 | |||||||||
| WBVar00370435 | |||||||||
| WBVar00370436 | |||||||||
| WBVar00370437 | |||||||||
| WBVar00370438 | |||||||||
| WBVar00370439 | |||||||||
| WBVar00370440 | |||||||||
| WBVar00600954 | |||||||||
| WBVar01413630 | |||||||||
| WBVar01666183 | |||||||||
| WBVar01666184 | |||||||||
| WBVar01666185 | |||||||||
| WBVar01497642 | |||||||||
| WBVar01784044 | |||||||||
| WBVar00551455 | |||||||||
| WBVar00551456 | |||||||||
| WBVar01498940 | |||||||||
| WBVar01308009 | |||||||||
| WBVar01308010 | |||||||||
| WBVar01308011 | |||||||||
| WBVar01308012 | |||||||||
| WBVar01308014 | |||||||||
| WBVar01308015 | |||||||||
| WBVar01308017 | |||||||||
| WBVar01308018 | |||||||||
| WBVar00276488 | |||||||||
| WBVar00276489 | |||||||||
| Strain | WBStrain00032087 | ||||||||
| WBStrain00037967 | |||||||||
| WBStrain00005369 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00015267 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | syd-1 encodes a protein that contains a Rho-GTPase-like activating domain as well as PDZ and C2 domains; during neuronal development, SYD-1 is required cell autonomously to positively regulate synaptogenesis; in regulating synapse development, SYD-1 functions as a positive regulator of SYD-2/liprin through direct interaction with ELKS-1, a pre-synaptic protein also required for synapse development; in turn, SYD-1 activity is regulated by RSY-1, a negative regulator of synaptogenesis, with which it also interacts physically; SYD-1 is expressed in neurons and localizes to presynaptic regions. | Paper_evidence | WBPaper00005543 | |||||
| WBPaper00028808 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Mar 2010 00:00:00 | ||||||||
| Automated_description | Enables GTPase activator activity; Roundabout binding activity; and small GTPase binding activity. Involved in cell projection organization; cellular localization; and locomotion. Located in presynaptic membrane. Expressed in nerve ring and neurons. Is an ortholog of human SYDE2 (synapse defective Rho GTPase homolog 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F35D2.5a | |||||||
| F35D2.5c | |||||||||
| Corresponding_CDS_history | F35D2.5:wp84 | ||||||||
| F35D2.5:wp92 | |||||||||
| F35D2.5b:wp93 | |||||||||
| F35D2.5b:wp274 | |||||||||
| Corresponding_transcript | F35D2.5a.1 | ||||||||
| F35D2.5c.1 | |||||||||
| F35D2.5c.2 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082910 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046330 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031774 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014326 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00000711 | ||||||||
| WBCnstr00000728 | |||||||||
| WBCnstr00010752 | |||||||||
| WBCnstr00034391 | |||||||||
| Construct_product | WBCnstr00000728 | ||||||||
| WBCnstr00007017 | |||||||||
| WBCnstr00010752 | |||||||||
| WBCnstr00010753 | |||||||||
| WBCnstr00012368 | |||||||||
| WBCnstr00012375 | |||||||||
| WBCnstr00018295 | |||||||||
| WBCnstr00021865 | |||||||||
| WBCnstr00034391 | |||||||||
| WBCnstr00038079 | |||||||||
| Antibody | WBAntibody00000569 | ||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | II | Position | 0.504817 | Error | 4.2e-05 | |||
| Positive | Positive_clone | F35D2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4188 | |||||||
| 4715 | |||||||||
| 4733 | |||||||||
| 5534 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (52) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
