WormBase Tree Display for Variation: WBVar01474118

WBVar01474118 Name: Public_name: tm6234
    Other_name: F35D2.5a.1:c.950+11_1616del
      F35D2.5c.1:c.152+11_818del
      F35D2.5c.2:c.152+11_818del
    HGVSg: CHROMOSOME_II:g.7588136_7589399del
  Sequence_details: SMap: S_parent: Sequence: R07G3
    Flanking_sequences: gatgacgtccttggagctctttgttctcca cggaacaaacctttgatattgatgatcatg
    Mapping_target: R07G3
    Source_location: 7 CHROMOSOME_II 7588135 7589400 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm6234_external
      tm6234_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6234
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006363
    Transcript: F35D2.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F35D2.5c.1:c.152+11_818del
        cDNA_position: ?-821
        CDS_position: ?-818
        Protein_position: ?-273
        Intron_number: 2-5/10
        Exon_number: 3-6/11
      F35D2.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F35D2.5a.1:c.950+11_1616del
        cDNA_position: ?-1620
        CDS_position: ?-1616
        Protein_position: ?-539
        Intron_number: 10-13/18
        Exon_number: 11-14/19
      F35D2.5c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F35D2.5c.2:c.152+11_818del
        cDNA_position: ?-1394
        CDS_position: ?-818
        Protein_position: ?-273
        Intron_number: 7-10/15
        Exon_number: 8-11/16
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 24635/24636-25899/25900 (1264 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
    Old Mapping_target F35D2 updated based on the VEP analysis pipeline to R07G3.
  Method: NBP_knockout_allele