WormBase Tree Display for Gene: WBGene00006066

WBGene00006066 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: sto-4 Person_evidence: WBPerson247
      Sequence_name: Y71H9A.3
      Molecular_name: Y71H9A.3
        Y71H9A.3.1
        CE22957
        Y71H9A.3.2
      Other_name: CELE_Y71H9A.3 Accession_evidence: NDB BX284606
      Public_name: sto-4
    DB_info: Database: AceView gene XM265
        WormQTL gene WBGene00006066
        WormFlux gene WBGene00006066
        NDB locus_tag CELE_Y71H9A.3
        Panther gene CAEEL|WormBase=WBGene00006066|UniProtKB=Q22165
          family PTHR10264
        NCBI gene 181350
        RefSeq protein NM_077543.5
        SwissProt UniProtAcc Q22165
        UniProt_GCRP UniProtAcc Q22165
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sto
    Allele (54)
    Legacy_information: [Barnes TM] sto for STOmatin family. Predicted gene T04F8.5
    RNASeq_FPKM (74)
    GO_annotation: 00074400
      00074401
      00074402
      00113942
      00113943
    Ortholog (29)
    Paralog: WBGene00003166 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006063 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006064 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006065 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006761 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006741 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006068 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006067 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006061 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in plasma membrane. Expressed in neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71H9A.3
    Corresponding_transcript: Y71H9A.3.1
      Y71H9A.3.2
    Other_sequence (19)
    Associated_feature (13)
  Experimental_info: RNAi_result: WBRNAi00052406 Inferred_automatically: RNAi_primary
      WBRNAi00058279 Inferred_automatically: RNAi_primary
      WBRNAi00018149 Inferred_automatically: RNAi_primary
      WBRNAi00021381 Inferred_automatically: RNAi_primary
      WBRNAi00037798 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4854
      Expr1026276
      Expr1032540
      Expr1161689
      Expr2016972
      Expr2035120
    Drives_construct: WBCnstr00012282
      WBCnstr00034562
    Construct_product: WBCnstr00034562
    Microarray_results (25)
    Expression_cluster: WBPaper00032425:up_in_rde-4
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_CoreEnriched
      WBPaper00037950:dopaminergic-neurons_embryo_enriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L1
      WBPaper00045316:prg-1_upregulated_L3
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Oogenic
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049626:UNC-75_target
      WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051558:aging_regulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053615:SMO-1_target
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059471:EGL-43_interacting
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061340:ALA
      WBPaper00061340:AVD
      WBPaper00061340:AVH
      WBPaper00061340:AVK
      WBPaper00061340:CAN
      WBPaper00061340:DVC
      WBPaper00061340:MC
      WBPaper00061340:mu_sph
      WBPaper00061340:NSM_parent
      WBPaper00061340:PVP
      WBPaper00061340:RIC_parent
      WBPaper00061340:RID_parent
      WBPaper00061340:RIM
      WBPaper00061340:RMD
      WBPaper00061340:SIA
      WBPaper00061340:SMD
      WBPaper00061527:acy-2-F35C5.11
      WBPaper00061527:sol-1-jnk-1_18695
      WBPaper00061651:AIZ_enriched
      WBPaper00061651:NSM_enriched
      WBPaper00061651:PDA_enriched
      WBPaper00061651:PDB_enriched
      WBPaper00061651:RIG_enriched
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062520:qui-1(db104)_upregulated
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:74_0
      WBPaper00065841:76_0
      WBPaper00066004:ceh-14(ch3)_downregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      cgc4489_group_1
      cgc4489_group_19
      WBPaper00005124:progesterone_10-7M_regulated
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025032:cluster_31
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:hlh_1_enriched
      WBPaper00031184:acrylamide_upregulated
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00034739:N2moreDR1350
      WBPaper00035504:daf-2(e1370)_upregulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036286:Pattern_H
      WBPaper00037695:WC_CC_6-day
      WBPaper00040210:Chlorpyrifos_24C_regulated
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041174:environmental
      WBPaper00041174:genotype_environment_interaction
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042234:xpa-1_upregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      [cgc5767]:cluster_9
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:Cluster_A
    Interaction (25)
  Map_info: Map: X Position: 5.33803 Error: 0.196943
    Positive: Positive_clone: T04F8 Person_evidence: WBPerson43
        Y71H9A Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4411
    Pseudo_map_position
  Reference (6)
  Remark: T04F8.5 subsumed into Y71H9A.3.[sdm 000921]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene