WormBase Tree Display for Gene: WBGene00005032
expand all nodes | collapse all nodes | view schema
WBGene00005032 | Evidence | Person_evidence | WBPerson522 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_II | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | sra-6 | Person_evidence | WBPerson42 | |||||
Sequence_name | AH6.10 | ||||||||
Molecular_name | AH6.10 | ||||||||
AH6.10.1 | |||||||||
CE01451 | |||||||||
Other_name | CELE_AH6.10 | Accession_evidence | NDB | BX284602 | |||||
Public_name | sra-6 | ||||||||
DB_info | Database | AceView | gene | 2J836 | |||||
WormQTL | gene | WBGene00005032 | |||||||
WormFlux | gene | WBGene00005032 | |||||||
NDB | locus_tag | CELE_AH6.10 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00005032|UniProtKB=Q09208 | |||||||
family | PTHR31357 | ||||||||
NCBI | gene | 191777 | |||||||
RefSeq | protein | NM_063651.2 | |||||||
SwissProt | UniProtAcc | Q09208 | |||||||
TREEFAM | TREEFAM_ID | TF316946 | |||||||
UniProt_GCRP | UniProtAcc | Q09208 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sra | ||||||||
Allele (48) | |||||||||
Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor.sra-6:GFP expressed in sensory neurons ASH,ASI (fain t), interneuron PVQ; also in male spicule neurons SPD/SPV. sra-1 to sra-9 clustered. [Troemel et al. 1995; CX] | ||||||||
Strain (19) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00052877 | ||||||||
00052878 | |||||||||
00052879 | |||||||||
00052880 | |||||||||
00052881 | |||||||||
00052882 | |||||||||
00052883 | |||||||||
00113458 | |||||||||
00113459 | |||||||||
00113460 | |||||||||
Ortholog (37) | |||||||||
Paralog (34) | |||||||||
Structured_description | Concise_description | sra-6 encodes a seven-transmembrane chemosensory receptor; an sra-6::GFP fusion reporter is expressed in the ASH (strongly) and ASI (weakly) amphid sensory neurons, the PVQ interneurons, and in the SPD and SPV male spicule neurons; sra-6 expression in the ASH neurons is positively regulated by KIN-29, a serine/threonine kinase, acting through the HDA-4 class II histone deacetylase and the MEF-2 MADS domain transcription factor; in addition, maintenance of sra-6::gfp expression in the ASH and ASI requires activity of the DAF-7/TGF-beta signaling pathway. | Paper_evidence | WBPaper00002314 | |||||
WBPaper00005098 | |||||||||
WBPaper00005612 | |||||||||
WBPaper00028910 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 19 Oct 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception. Located in cilium. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | AH6.10 | |||||||
Corresponding_transcript | AH6.10.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00038616 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00009526 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027928 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067403 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (14) | |||||||||
Drives_construct (63) | |||||||||
Construct_product | WBCnstr00035254 | ||||||||
Microarray_results (16) | |||||||||
Expression_cluster (46) | |||||||||
Interaction (38) | |||||||||
Map_info | Map | II | Position | 1.57079 | Error | 0.006968 | |||
Positive | Positive_clone | AH6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (38) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |