WormBase Tree Display for Gene: WBGene00005032
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| WBGene00005032 | Evidence | Person_evidence | WBPerson522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_II | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | sra-6 | Person_evidence | WBPerson42 | |||||
| Sequence_name | AH6.10 | ||||||||
| Molecular_name | AH6.10 | ||||||||
| AH6.10.1 | |||||||||
| CE01451 | |||||||||
| Other_name | CELE_AH6.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sra-6 | ||||||||
| DB_info | Database | AceView | gene | 2J836 | |||||
| WormQTL | gene | WBGene00005032 | |||||||
| WormFlux | gene | WBGene00005032 | |||||||
| NDB | locus_tag | CELE_AH6.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005032|UniProtKB=Q09208 | |||||||
| family | PTHR31357 | ||||||||
| NCBI | gene | 191777 | |||||||
| RefSeq | protein | NM_063651.2 | |||||||
| SwissProt | UniProtAcc | Q09208 | |||||||
| TREEFAM | TREEFAM_ID | TF316946 | |||||||
| UniProt_GCRP | UniProtAcc | Q09208 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sra | ||||||||
| Allele (48) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor.sra-6:GFP expressed in sensory neurons ASH,ASI (fain t), interneuron PVQ; also in male spicule neurons SPD/SPV. sra-1 to sra-9 clustered. [Troemel et al. 1995; CX] | ||||||||
| Strain (19) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052877 | ||||||||
| 00052878 | |||||||||
| 00052879 | |||||||||
| 00052880 | |||||||||
| 00052881 | |||||||||
| 00052882 | |||||||||
| 00052883 | |||||||||
| 00113458 | |||||||||
| 00113459 | |||||||||
| 00113460 | |||||||||
| Ortholog (37) | |||||||||
| Paralog (34) | |||||||||
| Structured_description | Concise_description | sra-6 encodes a seven-transmembrane chemosensory receptor; an sra-6::GFP fusion reporter is expressed in the ASH (strongly) and ASI (weakly) amphid sensory neurons, the PVQ interneurons, and in the SPD and SPV male spicule neurons; sra-6 expression in the ASH neurons is positively regulated by KIN-29, a serine/threonine kinase, acting through the HDA-4 class II histone deacetylase and the MEF-2 MADS domain transcription factor; in addition, maintenance of sra-6::gfp expression in the ASH and ASI requires activity of the DAF-7/TGF-beta signaling pathway. | Paper_evidence | WBPaper00002314 | |||||
| WBPaper00005098 | |||||||||
| WBPaper00005612 | |||||||||
| WBPaper00028910 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception. Located in cilium. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | AH6.10 | |||||||
| Corresponding_transcript | AH6.10.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00038616 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009526 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027928 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067403 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (14) | |||||||||
| Drives_construct (63) | |||||||||
| Construct_product | WBCnstr00035254 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (46) | |||||||||
| Interaction | WBInteraction000003791 | ||||||||
| WBInteraction000004021 | |||||||||
| WBInteraction000004023 | |||||||||
| WBInteraction000004024 | |||||||||
| WBInteraction000004025 | |||||||||
| WBInteraction000004027 | |||||||||
| WBInteraction000004029 | |||||||||
| WBInteraction000005836 | |||||||||
| WBInteraction000006857 | |||||||||
| WBInteraction000029323 | |||||||||
| WBInteraction000029324 | |||||||||
| WBInteraction000029327 | |||||||||
| WBInteraction000030256 | |||||||||
| WBInteraction000030264 | |||||||||
| WBInteraction000030278 | |||||||||
| WBInteraction000031771 | |||||||||
| WBInteraction000134119 | |||||||||
| WBInteraction000139110 | |||||||||
| WBInteraction000150183 | |||||||||
| WBInteraction000166293 | |||||||||
| WBInteraction000166294 | |||||||||
| WBInteraction000166295 | |||||||||
| WBInteraction000166296 | |||||||||
| WBInteraction000166297 | |||||||||
| WBInteraction000166298 | |||||||||
| WBInteraction000166299 | |||||||||
| WBInteraction000199023 | |||||||||
| WBInteraction000211650 | |||||||||
| WBInteraction000222115 | |||||||||
| WBInteraction000231802 | |||||||||
| WBInteraction000289483 | |||||||||
| WBInteraction000333013 | |||||||||
| WBInteraction000501940 | |||||||||
| WBInteraction000502703 | |||||||||
| WBInteraction000502704 | |||||||||
| WBInteraction000541886 | |||||||||
| WBInteraction000556127 | |||||||||
| WBInteraction000556128 | |||||||||
| Map_info | Map | II | Position | 1.57079 | Error | 0.006968 | |||
| Positive | Positive_clone | AH6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (38) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
