WormBase Tree Display for Gene: WBGene00005032
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WBGene00005032 | Evidence | Person_evidence | WBPerson522 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_II | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | sra | ||||||
Allele (48) | |||||||
Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor.sra-6:GFP expressed in sensory neurons ASH,ASI (fain t), interneuron PVQ; also in male spicule neurons SPD/SPV. sra-1 to sra-9 clustered. [Troemel et al. 1995; CX] | ||||||
Strain (19) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00052877 | ||||||
00052878 | |||||||
00052879 | |||||||
00052880 | |||||||
00052881 | |||||||
00052882 | |||||||
00052883 | |||||||
00113458 | |||||||
00113459 | |||||||
00113460 | |||||||
Ortholog (37) | |||||||
Paralog (34) | |||||||
Structured_description | Concise_description | sra-6 encodes a seven-transmembrane chemosensory receptor; an sra-6::GFP fusion reporter is expressed in the ASH (strongly) and ASI (weakly) amphid sensory neurons, the PVQ interneurons, and in the SPD and SPV male spicule neurons; sra-6 expression in the ASH neurons is positively regulated by KIN-29, a serine/threonine kinase, acting through the HDA-4 class II histone deacetylase and the MEF-2 MADS domain transcription factor; in addition, maintenance of sra-6::gfp expression in the ASH and ASI requires activity of the DAF-7/TGF-beta signaling pathway. | Paper_evidence | WBPaper00002314 | |||
WBPaper00005098 | |||||||
WBPaper00005612 | |||||||
WBPaper00028910 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 19 Oct 2007 00:00:00 | ||||||
Automated_description | Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception. Located in cilium. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | AH6.10 | |||||
Corresponding_transcript | AH6.10.1 | ||||||
Experimental_info | RNAi_result | WBRNAi00038616 | Inferred_automatically | RNAi_primary | |||
WBRNAi00009526 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027928 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067403 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (14) | |||||||
Drives_construct (63) | |||||||
Construct_product | WBCnstr00035254 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (46) | |||||||
Interaction (38) | |||||||
Map_info | Map | II | Position | 1.57079 | Error | 0.006968 | |
Positive | Positive_clone | AH6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (38) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |