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WormBase Tree Display for Gene: WBGene00004993

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Name Class

WBGene00004993EvidenceAuthor_evidencePatthy L
Hodgkin JA
SMapS_parentSequenceC28C12
IdentityVersion1
NameCGC_namespp-8
Sequence_nameC28C12.5
Molecular_nameC28C12.5
C28C12.5.1
CE04112
Other_nameCELE_C28C12.5Accession_evidenceNDBBX284604
Public_namespp-8
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspp
Allele (26)
Possibly_affected_byWBVar02153248
StrainWBStrain00037700
RNASeq_FPKM (74)
OrthologWBGene00070898Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037906Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00152225Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00126872Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00194394Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g11292Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7944Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2693Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10875Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7578Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7962Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9031Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8662Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g24000Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3201Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4288Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00022.g1355Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_07027.g20640Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g15338Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15339Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00017.g1098Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17053Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_015324Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40067400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11091Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00074024Caenorhabditis remaneiFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-020108-1Danio rerioFrom_analysisHieranoid
Inparanoid
Panther
ZFIN:ZDB-GENE-091204-378Danio rerioFrom_analysisHieranoid
OrthoFinder
Panther
HGNC:9498Homo sapiensFrom_analysisHieranoid
Inparanoid
Panther
PhylomeDB
SonicParanoid
MGI:97783Mus musculusFrom_analysisHieranoid
Inparanoid
Panther
MGI:1924193Mus musculusFrom_analysisHieranoid
Inparanoid
Panther
RGD:3423Rattus norvegicusFrom_analysisHieranoid
Inparanoid
Panther
RGD:1307368Rattus norvegicusFrom_analysisHieranoid
Inparanoid
Panther
ParalogWBGene00004992Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004998Caenorhabditis elegansFrom_analysisPanther
WBGene00005000Caenorhabditis elegansFrom_analysisPanther
WBGene00004995Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in OLL; PVD; hermaphrodite distal tip cell; intestine; and male distal tip cell based on SAGE; microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twenty-two chemicals including 1-methylnicotinamide; mianserin; and D-glucose based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in atypical Gaucher's disease due to saposin c deficiency; combined saposin deficiency; and late onset Parkinson's disease. Human PSAP enables several functions, including ganglioside binding activity; protein homodimerization activity; and scaffold protein binding activity. Is predicted to encode a protein with the following domains: Saposin B type, region 2; Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. Is an ortholog of human PSAP (prosaposin).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110961Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9498)
DOID:0060892Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9498)
DOID:0111330Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9498)
Molecular_infoCorresponding_CDSC28C12.5
Corresponding_transcriptC28C12.5.1
Other_sequenceCBC05108_1
CJC00917_1
CRC05139_1
CJC05336_1
CR01091
FD515225.1
CBC04916_1
CSC01755_1
Associated_featureWBsf997227
WBsf997228
WBsf997229
WBsf1017851
WBsf228685
WBsf228686
Experimental_infoRNAi_resultWBRNAi00011294Inferred_automaticallyRNAi_primary
WBRNAi00029296Inferred_automaticallyRNAi_primary
WBRNAi00041402Inferred_automaticallyRNAi_primary
WBRNAi00075912Inferred_automaticallyRNAi_primary
Expr_patternExpr15193
Expr1014155
Expr1032484
Expr1145433
Expr2016086
Expr2034322
Microarray_results (17)
Expression_cluster (253)
Interaction (53)
Map_infoMapIVPosition3.84664Error0.001961
PositivePositive_cloneC28C12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024209
WBPaper00038491
WBPaper00041771
WBPaper00055090
WBPaper00060006
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene