WormBase Tree Display for Gene: WBGene00004981
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| WBGene00004981 | Evidence | Paper_evidence | WBPaper00005941 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y66H1B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | spl-1 | |||||||
| Sequence_name | Y66H1B.4 | ||||||||
| Molecular_name | Y66H1B.4 | ||||||||
| Y66H1B.4.1 | |||||||||
| CE20348 | |||||||||
| Other_name | spl | Accession_evidence | EMBL | AF144639 | |||||
| CELE_Y66H1B.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | spl-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spl | ||||||||
| Allele (48) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP4016 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00006418 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007593 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022427 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000239 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001839 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006409 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006562 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015467 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | spl-1 encodes a sphingosine-1-phosphate lyase; spl-1 expression is regulated by the GATA-type transcription factor ELT-2. | Paper_evidence | WBPaper00024977 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 24 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable sphinganine-1-phosphate aldolase activity. Predicted to be involved in sphingolipid catabolic process. Predicted to be located in endoplasmic reticulum. Expressed in head and intestine. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Is an ortholog of human SGPL1 (sphingosine-1-phosphate lyase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080265 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10817) | ||||
| Molecular_info | Corresponding_CDS | Y66H1B.4 | |||||||
| Corresponding_transcript | Y66H1B.4.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf047549 | ||||||||
| WBsf047550 | |||||||||
| WBsf047551 | |||||||||
| WBsf995135 | |||||||||
| WBsf995136 | |||||||||
| WBsf995137 | |||||||||
| WBsf1016544 | |||||||||
| WBsf229678 | |||||||||
| WBsf229679 | |||||||||
| WBsf229680 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr2571 | ||||||||
| Expr1019679 | |||||||||
| Expr1032479 | |||||||||
| Expr1161390 | |||||||||
| Expr2016061 | |||||||||
| Expr2034297 | |||||||||
| Drives_construct | WBCnstr00010858 | ||||||||
| WBCnstr00018877 | |||||||||
| WBCnstr00020144 | |||||||||
| WBCnstr00022739 | |||||||||
| WBCnstr00022740 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (102) | |||||||||
| Map_info | Map | IV | Position | -26.3038 | Error | 0.020777 | |||
| Positive | Positive_clone | Y66H1B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4370 | |||||||
| 4691 | |||||||||
| 5537 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
