WormBase Tree Display for Gene: WBGene00006418
expand all nodes | collapse all nodes | view schema
| WBGene00006418 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0222 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | spl-2 | Person_evidence | WBPerson260 | |||||
| Sequence_name | B0222.4 | ||||||||
| Molecular_name | B0222.4 | ||||||||
| B0222.4.1 | |||||||||
| CE06695 | |||||||||
| Other_name | tag-38 | ||||||||
| CELE_B0222.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | spl-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 11 Jun 2018 11:44:56 | WBPerson1983 | Name_change | CGC_name | spl | ||||
| Other_name | tag-38 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spl | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00035610 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00058219 | ||||||||
| 00058220 | |||||||||
| 00058221 | |||||||||
| 00058222 | |||||||||
| 00058223 | |||||||||
| 00114047 | |||||||||
| 00114048 | |||||||||
| 00114049 | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00004981 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007593 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022427 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000239 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001839 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006409 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006562 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015467 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable sphinganine-1-phosphate aldolase activity. Involved in defense response to Gram-positive bacterium. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in nephrotic syndrome type 14. Is an ortholog of human SGPL1 (sphingosine-1-phosphate lyase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080265 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10817) | ||||
| Molecular_info | Corresponding_CDS | B0222.4 | |||||||
| Corresponding_transcript | B0222.4.1 | ||||||||
| Other_sequence | CR11485 | ||||||||
| CRC10100_1 | |||||||||
| CR11484 | |||||||||
| Associated_feature | WBsf652887 | ||||||||
| WBsf234185 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028006 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009599 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038755 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095238 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10613 | ||||||||
| Expr1012444 | |||||||||
| Expr1032606 | |||||||||
| Expr1142966 | |||||||||
| Expr2017282 | |||||||||
| Expr2035417 | |||||||||
| Drives_construct | WBCnstr00034363 | ||||||||
| Construct_product | WBCnstr00017104 | ||||||||
| WBCnstr00034363 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (182) | |||||||||
| Interaction | WBInteraction000034495 | ||||||||
| WBInteraction000034496 | |||||||||
| WBInteraction000319126 | |||||||||
| WBInteraction000321982 | |||||||||
| WBInteraction000361540 | |||||||||
| WBInteraction000387004 | |||||||||
| Map_info | Map | V | Position | 1.94652 | Error | 0.001504 | |||
| Positive | Positive_clone | B0222 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5601 | |||||||
| 5651 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028789 | ||||||||
| WBPaper00032243 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064552 | |||||||||
| WBPaper00064949 | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
