WormBase Tree Display for Gene: WBGene00004815
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| WBGene00004815 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C52D10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | skr-9 | Person_evidence | WBPerson322 | |||||
| Sequence_name | C52D10.7 | ||||||||
| Molecular_name | C52D10.7 | ||||||||
| C52D10.7.1 | |||||||||
| CE17591 | |||||||||
| Other_name | CELE_C52D10.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | skr-9 | ||||||||
| DB_info | Database | AceView | gene | 4S107 | |||||
| WormQTL | gene | WBGene00004815 | |||||||
| WormFlux | gene | WBGene00004815 | |||||||
| NDB | locus_tag | CELE_C52D10.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004815|UniProtKB=G5EFA9 | |||||||
| family | PTHR11165 | ||||||||
| NCBI | gene | 178494 | |||||||
| RefSeq | protein | NM_070642.6 | |||||||
| TREEFAM | TREEFAM_ID | TF300142 | |||||||
| TrEMBL | UniProtAcc | G5EFA9 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFA9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00033168 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00017764 | ||||||||
| 00017765 | |||||||||
| 00017766 | |||||||||
| 00017767 | |||||||||
| 00017768 | |||||||||
| 00113222 | |||||||||
| Ortholog (116) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation. | Paper_evidence | WBPaper00005128 | |||||
| WBPaper00005129 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C52D10.7 | |||||||
| Corresponding_transcript | C52D10.7.1 | ||||||||
| Associated_feature | WBsf998986 | ||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr2443 | ||||||||
| Expr1022666 | |||||||||
| Expr1032391 | |||||||||
| Expr1146990 | |||||||||
| Expr2015856 | |||||||||
| Expr2034089 | |||||||||
| Drives_construct | WBCnstr00010834 | ||||||||
| WBCnstr00035368 | |||||||||
| Construct_product | WBCnstr00010834 | ||||||||
| WBCnstr00016600 | |||||||||
| WBCnstr00035368 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction (146) | |||||||||
| Map_info | Map | IV | Position | 16.2315 | Error | 0.000412 | |||
| Positive | Positive_clone | C52D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005129 | ||||||||
| WBPaper00029151 | |||||||||
| WBPaper00033115 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
