WormBase Tree Display for Gene: WBGene00004815

WBGene00004815 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C52D10
  Identity: Version: 1
    Name: CGC_name: skr-9 Person_evidence: WBPerson322
      Sequence_name: C52D10.7
      Molecular_name: C52D10.7
        C52D10.7.1
        CE17591
      Other_name: CELE_C52D10.7 Accession_evidence: NDB BX284604
      Public_name: skr-9
    DB_info: Database: AceView gene 4S107
        WormQTL gene WBGene00004815
        WormFlux gene WBGene00004815
        NDB locus_tag CELE_C52D10.7
        Panther gene CAEEL|WormBase=WBGene00004815|UniProtKB=G5EFA9
          family PTHR11165
        NCBI gene 178494
        RefSeq protein NM_070642.6
        TREEFAM TREEFAM_ID TF300142
        TrEMBL UniProtAcc G5EFA9
        UniProt_GCRP UniProtAcc G5EFA9
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: skr
    Allele (22)
    Strain: WBStrain00033168
    RNASeq_FPKM (74)
    GO_annotation: 00017764
      00017765
      00017766
      00017767
      00017768
      00113222
    Ortholog: WBGene00023861 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00023862 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
      WBGene00023875 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00030782 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
      WBGene00030783 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00035793 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00140690 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00151425 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00156870 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00158276 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00143728 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00055345 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055298 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055343 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00063464 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00055299 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055344 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00063463 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055297 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00076700 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00066744 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00055341 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055346 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00068452 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055340 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00055342 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
      WBGene00145030 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00145619 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00156572 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00153523 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00055337 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00078018 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00063465 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00078066 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00148743 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00158272 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00146131 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00148611 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00146642 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00163809 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00145589 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00155935 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00148216 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00159670 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00164296 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00150791 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00159118 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00149786 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00143777 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00142612 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00152355 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00141805 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00157920 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00160444 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00226870 Brugia malayi From_analysis: WormBase-Compara
      CSP31.g6338 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g11097 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g11098 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g11100 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g14204 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g14591 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g14592 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18199 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18201 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18202 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18203 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18204 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18205 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18206 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18529 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g18534 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g19938 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g19944 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g19946 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4238 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4239 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4240 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4242 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4243 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4244 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4245 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4246 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4247 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4248 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4249 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4250 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4252 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4253 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4258 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4260 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g4261 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g5420 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g5421 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g569 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g7009 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Pan_g21634 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20023200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_20025500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_20025600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12840 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246295 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00099638 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00277920 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258939 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285691 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002736 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0025637 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0026174 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0026175 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0031074 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0026176 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      FB:FBgn0034863 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1707 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      HGNC:10899 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      MGI:103575 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      RGD:1359648 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
    Paralog (20)
    Structured_description: Concise_description: skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation. Paper_evidence: WBPaper00005128
            WBPaper00005129
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C52D10.7
    Corresponding_transcript: C52D10.7.1
    Associated_feature: WBsf998986
  Experimental_info: RNAi_result (23)
    Expr_pattern: Expr2443
      Expr1022666
      Expr1032391
      Expr1146990
      Expr2015856
      Expr2034089
    Drives_construct: WBCnstr00010834
      WBCnstr00035368
    Construct_product: WBCnstr00010834
      WBCnstr00016600
      WBCnstr00035368
    Microarray_results (16)
    Expression_cluster (179)
    Interaction (146)
  Map_info: Map: IV Position: 16.2315 Error: 0.000412
    Positive: Positive_clone: C52D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005129
    WBPaper00029151
    WBPaper00033115
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene