WormBase Tree Display for Gene: WBGene00004190
expand all nodes | collapse all nodes | view schema
| WBGene00004190 | SMap | S_parent | Sequence | T27F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pars-2 | Person_evidence | WBPerson36 | |||||
| WBPerson10953 | |||||||||
| Sequence_name | T27F6.5 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | prs-2 | ||||||||
| CELE_T27F6.5 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pars-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | pars-2 | ||||
| Other_name | prs-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pars | ||||||||
| Allele (57) | |||||||||
| Strain | WBStrain00003363 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP1668 | ||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00044344 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004189 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006617 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 75. Is an ortholog of human PARS2 (prolyl-tRNA synthetase 2, mitochondrial). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112211 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30563) | ||||
| Molecular_info | Corresponding_CDS | T27F6.5a | |||||||
| T27F6.5b | |||||||||
| T27F6.5c | |||||||||
| T27F6.5d | |||||||||
| Corresponding_transcript | T27F6.5a.1 | ||||||||
| T27F6.5b.1 | |||||||||
| T27F6.5c.1 | |||||||||
| T27F6.5d.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf643761 | ||||||||
| WBsf985571 | |||||||||
| WBsf985572 | |||||||||
| WBsf985573 | |||||||||
| WBsf985574 | |||||||||
| WBsf985575 | |||||||||
| WBsf1010898 | |||||||||
| WBsf1010899 | |||||||||
| WBsf1010900 | |||||||||
| WBsf218598 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061690 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036048 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116863 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093113 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054342 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026420 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026421 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004329 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071066 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093133 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1177 | ||||||||
| Expr6796 | |||||||||
| Expr1029198 | |||||||||
| Expr1032050 | |||||||||
| Expr1157888 | |||||||||
| Expr2014739 | |||||||||
| Expr2032973 | |||||||||
| Drives_construct | WBCnstr00003834 | ||||||||
| Microarray_results (45) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | I | Position | 13.2372 | Error | 0.001975 | |||
| Positive | Positive_clone | T27F6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049490 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Connection made from predicted gene which has synthetase Pfam domain similarity. [sdm 12/01] | ||||||||
| dl1 : probably cytoplasmic | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
