WormBase Tree Display for Gene: WBGene00006617
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| WBGene00006617 | SMap | S_parent | Sequence | C47D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tars-1 | Person_evidence | WBPerson36 | |||||
| WBPerson10953 | |||||||||
| Sequence_name | C47D12.6 | ||||||||
| Molecular_name | C47D12.6a | ||||||||
| C47D12.6a.1 | |||||||||
| CE05434 | |||||||||
| C47D12.6b | |||||||||
| CE33765 | |||||||||
| C47D12.6b.1 | |||||||||
| C47D12.6b.2 | |||||||||
| Other_name | trs-1 | ||||||||
| CELE_C47D12.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | tars-1 | ||||||||
| DB_info | Database (14) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | tars-1 | ||||
| Other_name | trs-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tars | ||||||||
| Allele (66) | |||||||||
| Possibly_affected_by | WBVar02157265 | ||||||||
| Strain | WBStrain00003772 | ||||||||
| WBStrain00051163 | |||||||||
| WBStrain00051903 | |||||||||
| WBStrain00050271 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00004189 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004190 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044344 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable threonine-tRNA ligase activity. Involved in determination of adult lifespan. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 21 and nonphotosensitive trichothiodystrophy 7. Is an ortholog of human TARS3 (threonyl-tRNA synthetase 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111870 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11572) | ||||
| DOID:0111465 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30740) | ||||||
| Molecular_info | Corresponding_CDS | C47D12.6a | |||||||
| C47D12.6b | |||||||||
| Corresponding_CDS_history | C47D12.6:wp99 | ||||||||
| Corresponding_transcript | C47D12.6a.1 | ||||||||
| C47D12.6b.1 | |||||||||
| C47D12.6b.2 | |||||||||
| Other_sequence (171) | |||||||||
| Associated_feature | WBsf650613 | ||||||||
| WBsf655393 | |||||||||
| WBsf655394 | |||||||||
| WBsf655395 | |||||||||
| WBsf666189 | |||||||||
| WBsf989854 | |||||||||
| WBsf989855 | |||||||||
| WBsf1013291 | |||||||||
| WBsf223982 | |||||||||
| WBsf223983 | |||||||||
| Experimental_info | RNAi_result (36) | ||||||||
| Expr_pattern | Expr5528 | ||||||||
| Expr1014088 | |||||||||
| Expr1032745 | |||||||||
| Expr1146654 | |||||||||
| Expr2017298 | |||||||||
| Expr2035433 | |||||||||
| Drives_construct | WBCnstr00004194 | ||||||||
| WBCnstr00037888 | |||||||||
| Construct_product | WBCnstr00037888 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (168) | |||||||||
| Map_info | Map | II | Position | 3.97857 | Error | 0.004766 | |||
| Positive | Positive_clone | C47D12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004651 | ||||||||
| WBPaper00004769 | |||||||||
| WBPaper00029435 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049531 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057375 | |||||||||
| WBPaper00060602 | |||||||||
| WBPaper00065363 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
