WormBase Tree Display for Gene: WBGene00004190
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WBGene00004190 | SMap | S_parent | Sequence | T27F6 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | pars-2 | Person_evidence | WBPerson36 | |||
WBPerson10953 | |||||||
Sequence_name | T27F6.5 | ||||||
Molecular_name (12) | |||||||
Other_name | prs-2 | ||||||
CELE_T27F6.5 | Accession_evidence | NDB | BX284601 | ||||
Public_name | pars-2 | ||||||
DB_info | Database (12) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pars | ||||||
Allele (57) | |||||||
Strain | WBStrain00003363 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Contained_in_operon | CEOP1668 | ||||||
Ortholog (42) | |||||||
Paralog | WBGene00044344 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00004189 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006617 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 75. Is an ortholog of human PARS2 (prolyl-tRNA synthetase 2, mitochondrial). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0112211 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30563) | ||
Molecular_info | Corresponding_CDS | T27F6.5a | |||||
T27F6.5b | |||||||
T27F6.5c | |||||||
T27F6.5d | |||||||
Corresponding_transcript | T27F6.5a.1 | ||||||
T27F6.5b.1 | |||||||
T27F6.5c.1 | |||||||
T27F6.5d.1 | |||||||
Other_sequence (21) | |||||||
Associated_feature | WBsf643761 | ||||||
WBsf985571 | |||||||
WBsf985572 | |||||||
WBsf985573 | |||||||
WBsf985574 | |||||||
WBsf985575 | |||||||
WBsf1010898 | |||||||
WBsf1010899 | |||||||
WBsf1010900 | |||||||
WBsf218598 | |||||||
Experimental_info | RNAi_result | WBRNAi00061690 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036048 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00116863 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093113 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054342 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026420 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026421 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00004329 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00071066 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093133 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1177 | ||||||
Expr6796 | |||||||
Expr1029198 | |||||||
Expr1032050 | |||||||
Expr1157888 | |||||||
Expr2014739 | |||||||
Expr2032973 | |||||||
Drives_construct | WBCnstr00003834 | ||||||
Microarray_results (45) | |||||||
Expression_cluster (93) | |||||||
Interaction (60) | |||||||
Map_info | Map | I | Position | 13.2372 | Error | 0.001975 | |
Positive | Positive_clone | T27F6 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00049490 | |||||||
WBPaper00055090 | |||||||
WBPaper00064339 | |||||||
Remark | Connection made from predicted gene which has synthetase Pfam domain similarity. [sdm 12/01] | ||||||
dl1 : probably cytoplasmic | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |