WormBase Tree Display for Gene: WBGene00003902
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| WBGene00003902 | SMap | S_parent | Sequence | Y106G6H | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pab-1 | Person_evidence | WBPerson1160 | |||||
| Sequence_name | Y106G6H.2 | ||||||||
| Molecular_name | Y106G6H.2 | ||||||||
| Y106G6H.2.1 | |||||||||
| CE20412 | |||||||||
| Y106G6H.2.2 | |||||||||
| Y106G6H.2.3 | |||||||||
| Other_name | CELE_Y106G6H.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | pab-1 | ||||||||
| DB_info | Database | AceView | gene | 1L10 | |||||
| WormQTL | gene | WBGene00003902 | |||||||
| WormFlux | gene | WBGene00003902 | |||||||
| NDB | locus_tag | CELE_Y106G6H.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003902|UniProtKB=Q9U302 | |||||||
| family | PTHR24012 | ||||||||
| NCBI | gene | 172920 | |||||||
| RefSeq | protein | NM_001383718.2 | |||||||
| TrEMBL | UniProtAcc | Q9U302 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U302 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pab | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00036402 | ||||||||
| WBStrain00007709 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (39) | |||||||||
| Ortholog (59) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Concise_description | pab-1 encodes a polyadenylate-binding protein (i.e., poly(A)-binding protein, or PAB); pab-1 is essential for germline proliferation, regulation of adult lifespan, and normal body size; PAB-1 forms a complex with ATX-2, the C. elegans ataxin 2 ortholog, which is also required for germline development; PAB-1 has been successfully used as an epitope-tagged transgenic reagent for tissue-specific isolation of mRNAs. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005428 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| WBPaper00024364 | |||||||||
| WBPaper00024924 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 07 Jul 2008 00:00:00 | ||||||||
| Automated_description | Enables mRNA binding activity. Involved in several processes, including gamete generation; positive regulation of reproductive process; and regulation of cell cycle. Located in P granule and P-body. Part of polysome. Expressed in intestine. Is an ortholog of several human genes including PABPC1 (poly(A) binding protein cytoplasmic 1); PABPC3 (poly(A) binding protein cytoplasmic 3); and PABPC4 (poly(A) binding protein cytoplasmic 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y106G6H.2 | |||||||
| Corresponding_CDS_history | Y106G6H.2b:wp274 | ||||||||
| Y106G6H.2c:wp274 | |||||||||
| Corresponding_transcript | Y106G6H.2.1 | ||||||||
| Y106G6H.2.2 | |||||||||
| Y106G6H.2.3 | |||||||||
| Other_sequence (258) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result (45) | ||||||||
| Expr_pattern | Expr8554 | ||||||||
| Expr13363 | |||||||||
| Expr1022819 | |||||||||
| Expr1031839 | |||||||||
| Expr1158811 | |||||||||
| Expr2014674 | |||||||||
| Expr2032907 | |||||||||
| Drives_construct | WBCnstr00035807 | ||||||||
| Construct_product (13) | |||||||||
| Antibody | WBAntibody00002359 | ||||||||
| WBAntibody00002494 | |||||||||
| WBAntibody00002700 | |||||||||
| WBAntibody00002921 | |||||||||
| Microarray_results (47) | |||||||||
| Expression_cluster (180) | |||||||||
| Interaction (595) | |||||||||
| Map_info | Map | I | Position | 5.02503 | Error | 0.008962 | |||
| Positive | Positive_clone | Y106G6H | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5441 | |||||||
| 5711 | |||||||||
| Reference (46) | |||||||||
| Method | Gene |
