WormBase Tree Display for Gene: WBGene00003851
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| WBGene00003851 | SMap | S_parent | Sequence | Y102E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | odr-4 | Person_evidence | WBPerson42 | |||||
| Sequence_name | Y102E9.1 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y102E9.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | odr-4 | ||||||||
| DB_info | Database | AceView | gene | 3H823 | |||||
| WormQTL | gene | WBGene00003851 | |||||||
| WormFlux | gene | WBGene00003851 | |||||||
| NDB | locus_tag | CELE_Y102E9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003851|UniProtKB=Q8I7F8 | |||||||
| family | PTHR33966 | ||||||||
| NCBI | gene | 175950 | |||||||
| RefSeq | protein | NM_001027644.9 | |||||||
| NM_001382900.2 | |||||||||
| NM_001392129.1 | |||||||||
| SwissProt | UniProtAcc | Q8I7F8 | |||||||
| TREEFAM | TREEFAM_ID | TF320359 | |||||||
| UniProt_GCRP | UniProtAcc | Q8I7F8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | odr | ||||||||
| Allele (48) | |||||||||
| Legacy_information | [Bargmann CI] defective chemotaxis to volatile odorants | ||||||||
| [C.elegansII] n2144 : defective chemotaxis to some volatile odoratants. n2144/Df similar. NA1. [Bargmann et al. 1993] | |||||||||
| [Dwyer ND] n2144 defective in odorant response to benzaldehyde, diacetyl, normal response to isoamyl alcohol, pyrazine. Fails to localize ODR-10 to cilia of AWA neurons. n2144 rescued by subclone including Y102E9.1, encoding 445 aa protein. n2144 is M372L plus splice acceptor change. | |||||||||
| Strain | WBStrain00027204 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (31) | |||||||||
| Structured_description | Concise_description | odr-4 encodes a novel type II membrane protein; ODR-4 is required for localization of a subset of G protein-coupled receptors (GPCRs)s, including ODR-10, to the cilia of olfactory neurons; ODR-4 affects response to a subset of AWA- and AWC- mediated olfactory responses, and is required for social feeding of npr-1 mutant animals; ODR-4 physically interacts with ODR-8 to form a complex at the endoplasmic reticulum membrane, and physically interacts wtih ODR-10, as well; ODR-4 is expressed in twelve pairs of chemosensory neurons: the ten amphid neurons and two phasmid neurons; odr-4 expression overlaps that of odr-8. | Paper_evidence | WBPaper00003063 | |||||
| WBPaper00005511 | |||||||||
| WBPaper00044965 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 02 May 2014 00:00:00 | ||||||||
| Automated_description | Involved in olfactory behavior; receptor localization to non-motile cilium; and response to odorant. Located in intracellular membrane-bounded organelle and protein-containing complex. Expressed in chemosensory neurons and neurons. Is an ortholog of human ODR4 (odr-4 GPCR localization factor homolog). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y102E9.1a | |||||||
| Y102E9.1b | |||||||||
| Y102E9.1c | |||||||||
| Corresponding_transcript | Y102E9.1a.1 | ||||||||
| Y102E9.1a.2 | |||||||||
| Y102E9.1a.3 | |||||||||
| Y102E9.1a.4 | |||||||||
| Y102E9.1b.1 | |||||||||
| Y102E9.1c.1 | |||||||||
| Other_sequence (31) | |||||||||
| Associated_feature | WBsf042313 | ||||||||
| WBsf645280 | |||||||||
| WBsf645281 | |||||||||
| WBsf992840 | |||||||||
| WBsf1015145 | |||||||||
| WBsf225148 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005178 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055160 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005789 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055159 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005790 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055161 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055157 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019822 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005720 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027800 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1432 | ||||||||
| Expr10139 | |||||||||
| Expr11650 | |||||||||
| Expr13173 | |||||||||
| Expr1011843 | |||||||||
| Expr1031817 | |||||||||
| Expr1158687 | |||||||||
| Expr2014610 | |||||||||
| Expr2032843 | |||||||||
| Drives_construct | WBCnstr00010274 | ||||||||
| WBCnstr00019303 | |||||||||
| WBCnstr00021696 | |||||||||
| WBCnstr00035829 | |||||||||
| WBCnstr00041883 | |||||||||
| Construct_product | WBCnstr00010274 | ||||||||
| WBCnstr00019303 | |||||||||
| WBCnstr00035829 | |||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (72) | |||||||||
| Anatomy_function | WBbtf0086 | ||||||||
| WBbtf1049 | |||||||||
| Map_info | Map | III | Position | -0.951383 | Error | 0.006326 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C28A6 | |||||||
| Y102E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Negative | Negative_clone | F37A4 | Author_evidence | Dwyer ND | |||||
| K07E12 | Author_evidence | Dwyer ND | |||||||
| Mapping_data | Multi_point | 2055 | |||||||
| 2056 | |||||||||
| 2057 | |||||||||
| 2058 | |||||||||
| 4976 | |||||||||
| 5453 | |||||||||
| Pos_neg_data | 5983 | ||||||||
| Reference (40) | |||||||||
| Remark | Data extracted from Dwyer et al. (1998) | ||||||||
| Method | Gene |
