WormBase Tree Display for Gene: WBGene00003851
expand all nodes | collapse all nodes | view schema
WBGene00003851 | SMap | S_parent | Sequence | Y102E9 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | odr | ||||||
Allele (48) | |||||||
Legacy_information | [Bargmann CI] defective chemotaxis to volatile odorants | ||||||
[C.elegansII] n2144 : defective chemotaxis to some volatile odoratants. n2144/Df similar. NA1. [Bargmann et al. 1993] | |||||||
[Dwyer ND] n2144 defective in odorant response to benzaldehyde, diacetyl, normal response to isoamyl alcohol, pyrazine. Fails to localize ODR-10 to cilia of AWA neurons. n2144 rescued by subclone including Y102E9.1, encoding 445 aa protein. n2144 is M372L plus splice acceptor change. | |||||||
Strain | WBStrain00027204 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (22) | |||||||
Ortholog (31) | |||||||
Structured_description | Concise_description | odr-4 encodes a novel type II membrane protein; ODR-4 is required for localization of a subset of G protein-coupled receptors (GPCRs)s, including ODR-10, to the cilia of olfactory neurons; ODR-4 affects response to a subset of AWA- and AWC- mediated olfactory responses, and is required for social feeding of npr-1 mutant animals; ODR-4 physically interacts with ODR-8 to form a complex at the endoplasmic reticulum membrane, and physically interacts wtih ODR-10, as well; ODR-4 is expressed in twelve pairs of chemosensory neurons: the ten amphid neurons and two phasmid neurons; odr-4 expression overlaps that of odr-8. | Paper_evidence | WBPaper00003063 | |||
WBPaper00005511 | |||||||
WBPaper00044965 | |||||||
Curator_confirmed | WBPerson48 | ||||||
WBPerson1843 | |||||||
Date_last_updated | 02 May 2014 00:00:00 | ||||||
Automated_description | Involved in olfactory behavior; receptor localization to non-motile cilium; and response to odorant. Located in intracellular membrane-bounded organelle and protein-containing complex. Expressed in chemosensory neurons and neurons. Is an ortholog of human ODR4 (odr-4 GPCR localization factor homolog). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y102E9.1a | |||||
Y102E9.1b | |||||||
Y102E9.1c | |||||||
Corresponding_transcript | Y102E9.1a.1 | ||||||
Y102E9.1a.2 | |||||||
Y102E9.1a.3 | |||||||
Y102E9.1a.4 | |||||||
Y102E9.1b.1 | |||||||
Y102E9.1c.1 | |||||||
Other_sequence (31) | |||||||
Associated_feature | WBsf042313 | ||||||
WBsf645280 | |||||||
WBsf645281 | |||||||
WBsf992840 | |||||||
WBsf1015145 | |||||||
WBsf225148 | |||||||
Experimental_info | RNAi_result | WBRNAi00005178 | Inferred_automatically | RNAi_primary | |||
WBRNAi00055160 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005789 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055159 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005790 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055161 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055157 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00019822 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005720 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027800 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1432 | ||||||
Expr10139 | |||||||
Expr11650 | |||||||
Expr13173 | |||||||
Expr1011843 | |||||||
Expr1031817 | |||||||
Expr1158687 | |||||||
Expr2014610 | |||||||
Expr2032843 | |||||||
Drives_construct | WBCnstr00010274 | ||||||
WBCnstr00019303 | |||||||
WBCnstr00021696 | |||||||
WBCnstr00035829 | |||||||
WBCnstr00041883 | |||||||
Construct_product | WBCnstr00010274 | ||||||
WBCnstr00019303 | |||||||
WBCnstr00035829 | |||||||
Microarray_results (36) | |||||||
Expression_cluster (103) | |||||||
Interaction (72) | |||||||
Anatomy_function | WBbtf0086 | ||||||
WBbtf1049 | |||||||
Map_info | Map | III | Position | -0.951383 | Error | 0.006326 | |
Well_ordered | |||||||
Positive | Positive_clone | C28A6 | |||||
Y102E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Negative | Negative_clone | F37A4 | Author_evidence | Dwyer ND | |||
K07E12 | Author_evidence | Dwyer ND | |||||
Mapping_data | Multi_point | 2055 | |||||
2056 | |||||||
2057 | |||||||
2058 | |||||||
4976 | |||||||
5453 | |||||||
Pos_neg_data | 5983 | ||||||
Reference (40) | |||||||
Remark | Data extracted from Dwyer et al. (1998) | ||||||
Method | Gene |