WormBase Tree Display for Gene: WBGene00003698

WBGene00003698 SMap: S_parent: Sequence: F35E8
  Identity: Version: 1
    Name: CGC_name: nhr-108 Person_evidence: WBPerson600
      Sequence_name: F35E8.12
      Molecular_name: F35E8.12
        F35E8.12.1
        CE15962
        F35E8.12.2
      Other_name: CELE_F35E8.12 Accession_evidence: NDB BX284605
      Public_name: nhr-108
    DB_info: Database: AceView gene 5Q404
        WormQTL gene WBGene00003698
        WormFlux gene WBGene00003698
        NDB locus_tag CELE_F35E8.12
        Panther gene CAEEL|WormBase=WBGene00003698|UniProtKB=O45449
          family PTHR46011
        NCBI gene 180065
        RefSeq protein NM_074586.5
        SwissProt UniProtAcc O45449
        TREEFAM TREEFAM_ID TF323089
        UniProt_GCRP UniProtAcc O45449
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (104)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (34)
    Paralog (217)
    Structured_description: Concise_description: nhr-108 encodes a nuclear receptor that is most highly conserved amongst nematode species. Paper_evidence: WBPaper00027309
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 May 2007 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head neurons; intestine; neurons; pharyngeal gland cell; and tail neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F35E8.12
    Corresponding_transcript: F35E8.12.1
      F35E8.12.2
    Associated_feature: WBsf653465
      WBsf978340
    Transcription_factor: WBTranscriptionFactor000256
  Experimental_info: RNAi_result: WBRNAi00031790 Inferred_automatically: RNAi_primary
      WBRNAi00014338 Inferred_automatically: RNAi_primary
      WBRNAi00046358 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7540
      Expr10190
      Expr1025689
      Expr1150239
      Expr2014005
      Expr2032245
    Drives_construct: WBCnstr00012685
      WBCnstr00035935
    Construct_product: WBCnstr00035935
    Microarray_results (18)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00046338:intestine_unique
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051257:Levamisole_upregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060886:met-2(n4256)_upregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061340:AIM
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061527:nhr-18-C34D1.4_6256
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064716:paraquat_downregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      cgc4489_group_9
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_F
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00039866:SAM_daf-19_downregulated
      WBPaper00040210:Diazinon_24C_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
    Interaction: WBInteraction000187074
      WBInteraction000205985
      WBInteraction000229613
      WBInteraction000444349
      WBInteraction000512487
  Map_info: Map: V Position: 9.28375 Error: 0.016118
    Positive: Positive_clone: F35E8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4525
    Pseudo_map_position
  Reference: WBPaper00027309
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene