WormBase Tree Display for Gene: WBGene00003590
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| WBGene00003590 | SMap | S_parent | Sequence | C28A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nex-3 | |||||||
| Sequence_name | C28A5.3 | ||||||||
| Molecular_name | C28A5.3 | ||||||||
| C28A5.3.1 | |||||||||
| CE00661 | |||||||||
| Other_name | CELE_C28A5.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | nex-3 | ||||||||
| DB_info | Database | AceView | gene | 3F533 | |||||
| WormQTL | gene | WBGene00003590 | |||||||
| WormFlux | gene | WBGene00003590 | |||||||
| NDB | locus_tag | CELE_C28A5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003590|UniProtKB=Q27473 | |||||||
| family | PTHR10502 | ||||||||
| NCBI | gene | 191716 | |||||||
| RefSeq | protein | NM_065502.4 | |||||||
| TrEMBL | UniProtAcc | Q27473 | |||||||
| UniProt_GCRP | UniProtAcc | Q27473 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nex | ||||||||
| Allele (38) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted protein with annexin similarity. [CGC] | ||||||||
| Strain | WBStrain00036168 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00003588 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003589 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003591 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nex-3 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; by homology, NEX-3 could function in a number of processes, such as membrane fusion, cytoskeletal interactions, and intracellular signaling; however, as loss of nex-3 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of NEX-3 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00005874 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables phospholipid binding activity and sulfur compound binding activity. Predicted to be located in cytoplasm. Is an ortholog of human ANXA3 (annexin A3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C28A5.3 | |||||||
| Corresponding_transcript | C28A5.3.1 | ||||||||
| Other_sequence (36) | |||||||||
| Associated_feature | WBsf992121 | ||||||||
| WBsf992122 | |||||||||
| WBsf224738 | |||||||||
| WBsf224739 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00072953 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029289 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011285 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005141 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041389 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072954 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8284 | ||||||||
| Expr1017980 | |||||||||
| Expr1145422 | |||||||||
| Expr2013981 | |||||||||
| Expr2032221 | |||||||||
| Drives_construct | WBCnstr00036020 | ||||||||
| Construct_product | WBCnstr00036020 | ||||||||
| Antibody | WBAntibody00001200 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (225) | |||||||||
| Interaction | WBInteraction000028927 | ||||||||
| WBInteraction000113565 | |||||||||
| WBInteraction000126522 | |||||||||
| WBInteraction000126583 | |||||||||
| WBInteraction000195723 | |||||||||
| WBInteraction000203295 | |||||||||
| WBInteraction000203471 | |||||||||
| WBInteraction000220393 | |||||||||
| WBInteraction000226548 | |||||||||
| WBInteraction000246276 | |||||||||
| WBInteraction000257449 | |||||||||
| WBInteraction000259788 | |||||||||
| WBInteraction000259789 | |||||||||
| WBInteraction000259790 | |||||||||
| WBInteraction000259791 | |||||||||
| WBInteraction000259792 | |||||||||
| WBInteraction000271409 | |||||||||
| WBInteraction000297974 | |||||||||
| WBInteraction000301451 | |||||||||
| WBInteraction000303792 | |||||||||
| WBInteraction000303793 | |||||||||
| WBInteraction000303794 | |||||||||
| WBInteraction000303795 | |||||||||
| WBInteraction000325730 | |||||||||
| WBInteraction000328441 | |||||||||
| WBInteraction000332746 | |||||||||
| WBInteraction000352704 | |||||||||
| WBInteraction000352973 | |||||||||
| WBInteraction000369940 | |||||||||
| WBInteraction000378997 | |||||||||
| WBInteraction000384241 | |||||||||
| WBInteraction000425643 | |||||||||
| WBInteraction000428275 | |||||||||
| WBInteraction000435101 | |||||||||
| WBInteraction000435569 | |||||||||
| WBInteraction000435893 | |||||||||
| WBInteraction000449363 | |||||||||
| WBInteraction000465002 | |||||||||
| WBInteraction000514740 | |||||||||
| WBInteraction000514745 | |||||||||
| WBInteraction000514746 | |||||||||
| WBInteraction000540102 | |||||||||
| WBInteraction000551486 | |||||||||
| WBInteraction000564092 | |||||||||
| WBInteraction000576330 | |||||||||
| Map_info | Map | III | Position | -3.17322 | Error | 0.000158 | |||
| Positive | Positive_clone | C28A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5582 | |||||||
| 4211 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | III -3.7 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
