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WormBase Tree Display for Gene: WBGene00003588

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Name Class

WBGene00003588SMapS_parentSequenceZC155
IdentityVersion1
NameCGC_namenex-1
Sequence_nameZC155.1
Molecular_nameZC155.1
ZC155.1.1
CE01431
Other_nameCELE_ZC155.1Accession_evidenceNDBBX284603
Public_namenex-1
DB_infoDatabaseAceViewgene3G315
WormQTLgeneWBGene00003588
WormFluxgeneWBGene00003588
NDBlocus_tagCELE_ZC155.1
PanthergeneCAEEL|WormBase=WBGene00003588|UniProtKB=G5EEA8
familyPTHR10502
NCBIgene175714
RefSeqproteinNM_065708.10
TrEMBLUniProtAccG5EEA8
UniProt_GCRPUniProtAccG5EEA8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnex
Allele (23)
Legacy_information[C.elegansII] NMK. Encodes protein with 42% identity to bovine annexin IV. Antibody stains pharyngeal grinder, gland cells, spermathecal folds. [CGC]
StrainWBStrain00035608
RNASeq_FPKM (74)
GO_annotation (19)
Ortholog (33)
ParalogWBGene00003589Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003590Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003591Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnex-1 encodes an annexin, a member of a family of calcium-dependent phospholipid binding proteins; NEX-1 is required for efficient engulfment of apoptotic cell corpses in the pharynx, and may also function in other membrane fusion events, such as exocytosis; NEX-1 in vitro can bind phosphatidylserine, phosphatidylinositol, heparin, heparan sulfate, and chondroitin sulfate; NEX-1 is expressed in the pharynx, hypodermal cells, the vulva, the uterus, the spermathecal valve, and yolk granules of maturing oocytes.Paper_evidenceWBPaper00003602
WBPaper00004309
WBPaper00005874
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables heparin binding activity and phospholipid binding activity. Involved in engulfment of apoptotic cell. Located in intracellular membrane-bounded organelle and plasma membrane. Expressed in hypodermis; pharynx; spermathecal-uterine junction; uterine toroidal epithelial cell; and vulva.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSZC155.1
Corresponding_transcriptZC155.1.1
Other_sequence (118)
Associated_featureWBsf654958
WBsf717068
WBsf717895
WBsf992337
WBsf1014858
WBsf224881
Experimental_infoRNAi_resultWBRNAi00107729Inferred_automaticallyRNAi_primary
WBRNAi00087553Inferred_automaticallyRNAi_primary
WBRNAi00067291Inferred_automaticallyRNAi_primary
WBRNAi00027665Inferred_automaticallyRNAi_primary
WBRNAi00021578Inferred_automaticallyRNAi_primary
WBRNAi00080498Inferred_automaticallyRNAi_primary
WBRNAi00005118Inferred_automaticallyRNAi_primary
WBRNAi00107730Inferred_automaticallyRNAi_primary
WBRNAi00058747Inferred_automaticallyRNAi_primary
WBRNAi00041886Inferred_automaticallyRNAi_primary
Expr_patternExpr1209
Expr1210
Expr1560
Expr8283
Expr1022217
Expr1031638
Expr1162168
Expr2013979
Expr2032219
Drives_constructWBCnstr00010152
WBCnstr00036022
Construct_productWBCnstr00036022
AntibodyWBAntibody00000107
WBAntibody00001198
Microarray_results (24)
Expression_cluster (220)
Interaction (36)
WBProcessWBbiopr:00000015
Map_infoMapIIIPosition-1.97258Error0.014291
PositivePositive_cloneZC155Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4167
4513
Pseudo_map_position
Reference (17)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene