WormBase Tree Display for Gene: WBGene00003045

WBGene00003045 SMap: S_parent: Sequence: F18A1
  Identity: Version: 1
    Name: CGC_name: lir-2 Person_evidence: WBPerson351
      Sequence_name: F18A1.4
      Molecular_name: F18A1.4a
        F18A1.4a.1
        CE27975
        F18A1.4b
        CE27976
        F18A1.4b.1
      Other_name: CELE_F18A1.4 Accession_evidence: NDB BX284602
      Public_name: lir-2
    DB_info: Database: AceView gene 2H961
        WormQTL gene WBGene00003045
        WormFlux gene WBGene00003045
        NDB locus_tag CELE_F18A1.4
        NCBI gene 174239
        RefSeq protein NM_001026927.3
            NM_001393121.1
        TREEFAM TREEFAM_ID TF316051
        TrEMBL UniProtAcc G5EGH3
            Q9Y049
        UniProt_GCRP UniProtAcc Q9Y049
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Molecular_info: Corresponding_CDS: F18A1.4a
      F18A1.4b
    Corresponding_transcript: F18A1.4a.1
      F18A1.4b.1
    Other_sequence: CRC08713_1
      CJC13328_1
      TSC00504_1
      CRC08939_1
      CR00009
      CR00006
      CR04511
      ES567398.1
    Associated_feature: WBsf644401
      WBsf657835
      WBsf657836
      WBsf657837
      WBsf978556
      WBsf988524
      WBsf1012578
      WBsf221625
    Transcription_factor: WBTranscriptionFactor000609
  Experimental_info: RNAi_result: WBRNAi00030223 Inferred_automatically: RNAi_primary
      WBRNAi00062209 Inferred_automatically: RNAi_primary
      WBRNAi00062208 Inferred_automatically: RNAi_primary
      WBRNAi00107139 Inferred_automatically: RNAi_primary
      WBRNAi00044909 Inferred_automatically: RNAi_primary
      WBRNAi00013483 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1323
      Expr1326
      Expr10500
      Expr1020775
      Expr1031429
      Expr1148879
      Expr1200035
      Expr1200238
      Expr2013225
      Expr2031456
    Drives_construct: WBCnstr00010219
      WBCnstr00036264
    Construct_product: WBCnstr00015385
      WBCnstr00016536
      WBCnstr00016539
      WBCnstr00036264
    Microarray_results (28)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00041071:spe-44_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00045971:tunicamycin_upregulated_RtcB(null)
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00048988:neuron_expressed
      WBPaper00049626:UNC-75_target
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053154:human-amyloid-beta_tau_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:tars-1-AFFX-r2-3026-5_at
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_9
      WBPaper00025032:cluster_9
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00029437:dcr-1_downregulated
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_allantoin_upregulated
      [cgc5767]:cluster_27
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(83_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
      [cgc6390]:Cluster_E
      [cgc6390]:intrinsic
    Interaction (13)
  Map_info: Map: II Position: 0.5086
    Positive: Positive_clone: F18A1 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4188
        4479
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene