WormBase Tree Display for Gene: WBGene00003007
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WBGene00003007 | SMap | S_parent | Sequence | C16B8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | lin-18 | Person_evidence | WBPerson261 | |||||
Sequence_name | C16B8.1 | ||||||||
Molecular_name | C16B8.1 | ||||||||
C16B8.1.1 | |||||||||
CE44782 | |||||||||
Other_name | CELE_C16B8.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | lin-18 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lin | ||||||||
Reference_allele | WBVar00143343 | ||||||||
Allele (54) | |||||||||
Legacy_information | e620 : some (<50%) hermaphrodites have single small protrusion posterior to vulva occasional vulval rupture; slight maternal effect slightly ts. ES2. Males phenotypically wildtype ME3. NA2 (n1051amber ts (resembles e620)). | ||||||||
See also e620, n1051 | |||||||||
[C.elegansII] e620 : some (<50%) hermaphrodites have single small protrusion posterior to vulva, occasional vulval rupture; Polarity of 2ary lineages variably disrupted. slight maternal effect; slightly ts. e620/Df stronger phenotype. ES2. Males phenotypically wildtype ME3. OA1: n1051amb,ts (resembles e620). [Ferguson et al. 198; MT; PS] | |||||||||
Strain | WBStrain00026854 | ||||||||
WBStrain00026896 | |||||||||
WBStrain00026934 | |||||||||
WBStrain00027230 | |||||||||
WBStrain00030926 | |||||||||
WBStrain00004187 | |||||||||
WBStrain00008502 | |||||||||
WBStrain00008506 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (36) | |||||||||
Ortholog (37) | |||||||||
Paralog (33) | |||||||||
Structured_description | Concise_description | lin-18 encodes a predicted receptor tyrosine kinase that is a member of the Ryk/Derailed family of tyrosine kinase-related receptors (OMIM:600524, mutations in humans are associated with cleft palate); in C. elegans, LIN-18 is required for establishing the polarity of the secondary vulval cell lineage produced by the P7.p vulval precursor cell; LIN-18 may be a receptor for Wnt-like signaling molecules, and in vulval development appears to function independently of, but in parallel with, LIN-17, a Frizzled-like Wnt receptor, also required for proper orientation of the P7.p lineage; a lin-18 reporter gene is expressed in body wall muscle, neurons, and the developing vulva; in the vulva, expression is detected in P5.p, P6.p, and P7.p and all of their descendants during the L3 and L4 larval stages. | Paper_evidence | WBPaper00000762 | |||||
WBPaper00000957 | |||||||||
WBPaper00024383 | |||||||||
WBPaper00024693 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 04 Aug 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable transmembrane receptor protein tyrosine kinase activity. Involved in several processes, including asymmetric protein localization involved in cell fate determination; axis specification; and positive regulation of axon guidance. Located in cytoplasm; nucleus; and plasma membrane. Expressed in body wall musculature; neurons; vulva; and vulval precursor cell. Is an ortholog of human RYK (receptor like tyrosine kinase). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C16B8.1 | |||||||
Corresponding_CDS_history | C16B8.1:wp213 | ||||||||
Corresponding_transcript | C16B8.1.1 | ||||||||
Other_sequence | TMC03023_1 | ||||||||
TM03073 | |||||||||
JI170406.1 | |||||||||
TM03074 | |||||||||
Associated_feature (14) | |||||||||
Experimental_info | RNAi_result | WBRNAi00010820 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040667 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098914 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101403 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101397 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027876 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101404 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101348 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101481 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3049 | ||||||||
Expr15708 | |||||||||
Expr1023205 | |||||||||
Expr1031402 | |||||||||
Expr1144715 | |||||||||
Expr2013164 | |||||||||
Expr2031396 | |||||||||
Drives_construct | WBCnstr00004673 | ||||||||
WBCnstr00011098 | |||||||||
WBCnstr00019803 | |||||||||
WBCnstr00036290 | |||||||||
Construct_product | WBCnstr00004673 | ||||||||
WBCnstr00019803 | |||||||||
WBCnstr00019804 | |||||||||
WBCnstr00036290 | |||||||||
Antibody | WBAntibody00002553 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (122) | |||||||||
Interaction (82) | |||||||||
WBProcess | WBbiopr:00000073 | ||||||||
Map_info | Map | X | Position | -8.8594 | Error | 0.06132 | |||
Well_ordered | |||||||||
Positive | Positive_clone | C07F2 | |||||||
C16B8 | Person_evidence | WBPerson625 | |||||||
WBPerson1146 | |||||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
T19D2 | |||||||||
Mapping_data | Multi_point (16) | ||||||||
Pos_neg_data | 5833 | ||||||||
5008 | |||||||||
5009 | |||||||||
5011 | |||||||||
5012 | |||||||||
Landmark_gene | |||||||||
Reference | WBPaper00000608 | ||||||||
WBPaper00000762 | |||||||||
WBPaper00000957 | |||||||||
WBPaper00001292 | |||||||||
WBPaper00001546 | |||||||||
WBPaper00001722 | |||||||||
WBPaper00002123 | |||||||||
WBPaper00002219 | |||||||||
WBPaper00004408 | |||||||||
WBPaper00004436 | |||||||||
WBPaper00004481 | |||||||||
WBPaper00006052 | |||||||||
WBPaper00012684 | |||||||||
WBPaper00013912 | |||||||||
WBPaper00014324 | |||||||||
WBPaper00014791 | |||||||||
WBPaper00014830 | |||||||||
WBPaper00015399 | |||||||||
WBPaper00015472 | |||||||||
WBPaper00015594 | |||||||||
WBPaper00016813 | |||||||||
WBPaper00017757 | |||||||||
WBPaper00017759 | |||||||||
WBPaper00018842 | |||||||||
WBPaper00020846 | |||||||||
WBPaper00022428 | |||||||||
WBPaper00023511 | |||||||||
WBPaper00023588 | |||||||||
WBPaper00024383 | |||||||||
WBPaper00024576 | |||||||||
WBPaper00024693 | |||||||||
WBPaper00025135 | |||||||||
WBPaper00025595 | |||||||||
WBPaper00026161 | |||||||||
WBPaper00026255 | |||||||||
WBPaper00027140 | |||||||||
WBPaper00027192 | |||||||||
WBPaper00027258 | |||||||||
WBPaper00027316 | |||||||||
WBPaper00027318 | |||||||||
WBPaper00028436 | |||||||||
WBPaper00029020 | |||||||||
WBPaper00029890 | |||||||||
WBPaper00031002 | |||||||||
WBPaper00031110 | |||||||||
WBPaper00032017 | |||||||||
WBPaper00032018 | |||||||||
WBPaper00032129 | |||||||||
WBPaper00032465 | |||||||||
WBPaper00034263 | |||||||||
WBPaper00035405 | |||||||||
WBPaper00037223 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00038605 | |||||||||
WBPaper00039199 | |||||||||
WBPaper00040136 | |||||||||
WBPaper00040939 | |||||||||
WBPaper00044058 | |||||||||
WBPaper00044679 | |||||||||
WBPaper00045442 | |||||||||
WBPaper00047137 | |||||||||
WBPaper00051102 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00057191 | |||||||||
WBPaper00059401 | |||||||||
WBPaper00060654 | |||||||||
WBPaper00065331 | |||||||||
Method | Gene |