WormBase Tree Display for Gene: WBGene00002255
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| WBGene00002255 | SMap | S_parent | Sequence | F40F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lbp-3 | Person_evidence | WBPerson492 | |||||
| Sequence_name | F40F4.4 | ||||||||
| Molecular_name | F40F4.4a | ||||||||
| F40F4.4a.1 | |||||||||
| CE30130 | |||||||||
| F40F4.4b | |||||||||
| CE39932 | |||||||||
| F40F4.4b.1 | |||||||||
| Other_name | CELE_F40F4.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | lbp-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00002255 | |||||
| WormFlux | gene | WBGene00002255 | |||||||
| NDB | locus_tag | CELE_F40F4.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002255|UniProtKB=Q20222 | |||||||
| family | PTHR22725 | ||||||||
| NCBI | gene | 180615 | |||||||
| RefSeq | protein | NM_001047785.4 | |||||||
| NM_001392744.1 | |||||||||
| SwissProt | UniProtAcc | Q20222 | |||||||
| TrEMBL | UniProtAcc | Q27GU2 | |||||||
| UniProt_GCRP | UniProtAcc | Q20222 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lbp | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067524 | ||||||||
| 00067525 | |||||||||
| 00067526 | |||||||||
| 00110320 | |||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00002253 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00002254 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002259 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00002258 | |||||||||
| WBGene00002257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00002260 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00021486 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00002256 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | lbp-3 encodes a predicted secreted fatty acid binding protein (FABP) that is similar to the Ascaris suum secreted FABP As-p18; by homology, LBP-3 is predicted to function in sequestering or transporting small hydrophobic molecules such as lipids and steroid hormones; an lbp-3::gfp promoter fusion is expressed in the embryo, with expression seen in presumptive hypodermal cells by the comma stage and in posterior body wall muscle cells by the twofold stage; lbp-3::gfp expression in larvae and adults is seen in body wall muscle cells adjacent to the pseudocoelom. | Paper_evidence | WBPaper00003911 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F4.4a | |||||||
| F40F4.4b | |||||||||
| Corresponding_CDS_history | F40F4.4:wp155 | ||||||||
| Corresponding_transcript | F40F4.4a.1 | ||||||||
| F40F4.4b.1 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature | WBsf647922 | ||||||||
| WBsf647923 | |||||||||
| WBsf235458 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00088956 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046867 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014658 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102644 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102247 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046866 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032033 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025519 | ||||||||
| Expr1031328 | |||||||||
| Expr1150733 | |||||||||
| Expr2013020 | |||||||||
| Expr2031252 | |||||||||
| Drives_construct | WBCnstr00036356 | ||||||||
| Construct_product | WBCnstr00036356 | ||||||||
| Regulate_expr_cluster | WBPaper00064156:lbp-3(overexpress)_downregulated | ||||||||
| WBPaper00064156:lbp-3(overexpress)_upregulated | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction | WBInteraction000134058 | ||||||||
| WBInteraction000135555 | |||||||||
| WBInteraction000376424 | |||||||||
| WBInteraction000414530 | |||||||||
| WBInteraction000552035 | |||||||||
| WBInteraction000561940 | |||||||||
| WBInteraction000580120 | |||||||||
| Map_info | Map | X | Position | -10.662 | |||||
| Positive | Positive_clone | F40F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003911 | ||||||||
| WBPaper00023807 | |||||||||
| WBPaper00025114 | |||||||||
| WBPaper00026800 | |||||||||
| WBPaper00041973 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00049940 | |||||||||
| WBPaper00064156 | |||||||||
| Remark | probable errors in exon choice | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
