WormBase Tree Display for Gene: WBGene00002253
expand all nodes | collapse all nodes | view schema
| WBGene00002253 | SMap | S_parent | Sequence | F40F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | lbp-1 | Person_evidence | WBPerson492 | |||||
| Sequence_name | F40F4.3 | ||||||||
| Molecular_name | F40F4.3 | ||||||||
| F40F4.3.1 | |||||||||
| CE04533 | |||||||||
| Other_name | CELE_F40F4.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | lbp-1 | ||||||||
| DB_info | Database | AceView | gene | XD879 | |||||
| WormQTL | gene | WBGene00002253 | |||||||
| WormFlux | gene | WBGene00002253 | |||||||
| NDB | locus_tag | CELE_F40F4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002253|UniProtKB=Q20223 | |||||||
| family | PTHR22725 | ||||||||
| NCBI | gene | 180616 | |||||||
| RefSeq | protein | NM_076156.8 | |||||||
| SwissProt | UniProtAcc | Q20223 | |||||||
| UniProt_GCRP | UniProtAcc | Q20223 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lbp | ||||||||
| Allele | WBVar01132596 | ||||||||
| WBVar01132597 | |||||||||
| WBVar01132598 | |||||||||
| WBVar01132599 | |||||||||
| WBVar01486655 | |||||||||
| WBVar02125422 | |||||||||
| WBVar01499636 | |||||||||
| WBVar02047738 | |||||||||
| WBVar01132595 | |||||||||
| Strain | WBStrain00037446 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067527 | ||||||||
| 00067528 | |||||||||
| 00067529 | |||||||||
| 00110318 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00002259 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00002257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00002260 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00021486 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00002254 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002256 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00002255 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | lbp-1 encodes a predicted secreted fatty acid binding protein (FABP) that is similar to the Ascaris suum secreted FABP As-p18; by homology, LBP-1 is predicted to function in sequestering or transporting small hydrophobic molecules such as lipids and steroid hormones; an lbp-1::gfp promoter fusion is expressed in the embryo, beginning at gastrulation, in presumptive hypodermal precursors; lbp-1::gfp hypodermal expression continues in hyp7 nuclei through hatching and is then seen only in one ventral cord neuron from the L1 to adult stages; an LBP-1::GFP fusion construct that contains the predicted LBP-1 secretory signal is secreted into the perivitelline fluid prior to hatching. | Paper_evidence | WBPaper00003911 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F4.3 | |||||||
| Corresponding_transcript | F40F4.3.1 | ||||||||
| Other_sequence (73) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00102642 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046865 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088954 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032032 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6010 | ||||||||
| Expr1031327 | |||||||||
| Expr1150732 | |||||||||
| Expr2013018 | |||||||||
| Expr2031250 | |||||||||
| Drives_construct | WBCnstr00003451 | ||||||||
| WBCnstr00008651 | |||||||||
| WBCnstr00020895 | |||||||||
| WBCnstr00020905 | |||||||||
| WBCnstr00020919 | |||||||||
| WBCnstr00020920 | |||||||||
| WBCnstr00020921 | |||||||||
| WBCnstr00020929 | |||||||||
| WBCnstr00021437 | |||||||||
| WBCnstr00036358 | |||||||||
| Construct_product | WBCnstr00036358 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (260) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | X | Position | -10.6531 | |||||
| Positive | Positive_clone | F40F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003911 | ||||||||
| WBPaper00005122 | |||||||||
| WBPaper00012717 | |||||||||
| WBPaper00016914 | |||||||||
| WBPaper00023807 | |||||||||
| WBPaper00025114 | |||||||||
| WBPaper00026800 | |||||||||
| WBPaper00027244 | |||||||||
| WBPaper00027365 | |||||||||
| WBPaper00027616 | |||||||||
| WBPaper00031723 | |||||||||
| WBPaper00032325 | |||||||||
| WBPaper00040135 | |||||||||
| WBPaper00041973 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00062488 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
