WormBase Tree Display for Gene: WBGene00002253
expand all nodes | collapse all nodes | view schema
WBGene00002253 | SMap | S_parent | Sequence | F40F4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | lbp-1 | Person_evidence | WBPerson492 | |||||
Sequence_name | F40F4.3 | ||||||||
Molecular_name | F40F4.3 | ||||||||
F40F4.3.1 | |||||||||
CE04533 | |||||||||
Other_name | CELE_F40F4.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | lbp-1 | ||||||||
DB_info | Database | AceView | gene | XD879 | |||||
WormQTL | gene | WBGene00002253 | |||||||
WormFlux | gene | WBGene00002253 | |||||||
NDB | locus_tag | CELE_F40F4.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00002253|UniProtKB=Q20223 | |||||||
family | PTHR22725 | ||||||||
NCBI | gene | 180616 | |||||||
RefSeq | protein | NM_076156.8 | |||||||
SwissProt | UniProtAcc | Q20223 | |||||||
UniProt_GCRP | UniProtAcc | Q20223 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lbp | ||||||||
Allele | WBVar01132596 | ||||||||
WBVar01132597 | |||||||||
WBVar01132598 | |||||||||
WBVar01132599 | |||||||||
WBVar01486655 | |||||||||
WBVar02125422 | |||||||||
WBVar01499636 | |||||||||
WBVar02047738 | |||||||||
WBVar01132595 | |||||||||
Strain | WBStrain00037446 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00067527 | ||||||||
00067528 | |||||||||
00067529 | |||||||||
00110318 | |||||||||
Ortholog (44) | |||||||||
Paralog | WBGene00002259 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00002257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00002260 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00021486 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00002254 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00002256 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00002255 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | lbp-1 encodes a predicted secreted fatty acid binding protein (FABP) that is similar to the Ascaris suum secreted FABP As-p18; by homology, LBP-1 is predicted to function in sequestering or transporting small hydrophobic molecules such as lipids and steroid hormones; an lbp-1::gfp promoter fusion is expressed in the embryo, beginning at gastrulation, in presumptive hypodermal precursors; lbp-1::gfp hypodermal expression continues in hyp7 nuclei through hatching and is then seen only in one ventral cord neuron from the L1 to adult stages; an LBP-1::GFP fusion construct that contains the predicted LBP-1 secretory signal is secreted into the perivitelline fluid prior to hatching. | Paper_evidence | WBPaper00003911 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 16 Jan 2008 00:00:00 | ||||||||
Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F40F4.3 | |||||||
Corresponding_transcript | F40F4.3.1 | ||||||||
Other_sequence (73) | |||||||||
Associated_feature (12) | |||||||||
Experimental_info | RNAi_result | WBRNAi00102642 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014657 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046865 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00088954 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032032 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr6010 | ||||||||
Expr1031327 | |||||||||
Expr1150732 | |||||||||
Expr2013018 | |||||||||
Expr2031250 | |||||||||
Drives_construct | WBCnstr00003451 | ||||||||
WBCnstr00008651 | |||||||||
WBCnstr00020895 | |||||||||
WBCnstr00020905 | |||||||||
WBCnstr00020919 | |||||||||
WBCnstr00020920 | |||||||||
WBCnstr00020921 | |||||||||
WBCnstr00020929 | |||||||||
WBCnstr00021437 | |||||||||
WBCnstr00036358 | |||||||||
Construct_product | WBCnstr00036358 | ||||||||
Microarray_results (13) | |||||||||
Expression_cluster (260) | |||||||||
Interaction (36) | |||||||||
Map_info | Map | X | Position | -10.6531 | |||||
Positive | Positive_clone | F40F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |