WormBase Tree Display for Gene: WBGene00001394
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| WBGene00001394 | SMap | S_parent | Sequence | W02A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | fat-2 | |||||||
| Sequence_name | W02A2.1 | ||||||||
| Molecular_name | W02A2.1a | ||||||||
| W02A2.1a.1 | |||||||||
| CE21231 | |||||||||
| W02A2.1b | |||||||||
| CE49971 | |||||||||
| W02A2.1b.1 | |||||||||
| Other_name | CELE_W02A2.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | fat-2 | ||||||||
| DB_info | Database | AceView | gene | 4O89 | |||||
| WormQTL | gene | WBGene00001394 | |||||||
| WormFlux | gene | WBGene00001394 | |||||||
| NDB | locus_tag | CELE_W02A2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001394|UniProtKB=G5EGA5 | |||||||
| family | PTHR19353 | ||||||||
| NCBI | gene | 178293 | |||||||
| RefSeq | protein | NM_070159.11 | |||||||
| NM_001380510.1 | |||||||||
| KEGG | KEGG_id | 1.14.19.6 | |||||||
| NemaPath | KEGG_id | 1.14.19.6 | |||||||
| SwissProt | UniProtAcc | G5EGA5 | |||||||
| TrEMBL | UniProtAcc | A0A061AJ35 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGA5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fat | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00031679 | ||||||||
| WBStrain00004011 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog | WBGene00062757 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00073899 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00024976 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00163212 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00108288 | Pristionchus pacificus | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00147377 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00101230 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00226372 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| CBOVI.g11557 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g11308 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g15210 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g13860 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g6995 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g5302 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g14440 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g2829 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g22707 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g2398 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00005.g444 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_06407.g20247 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-fat-2 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold589.g5048 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_02412.g26367 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_19465 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_014532 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g11217 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Pan_g24147 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| Sp34_40139100 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g12273 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00241463 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| WBGene00266086 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| WBGene00266087 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00001393 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | fat-2 encodes a delta-12 fatty acyl desaturase that increases membranefluidity when expressed in yeast, and that may protect against coldstress; FAT-2's substrate is unknown, but may be acyl-CoA; FAT-2 isrequired in vivo for normal levels of C18 or C20 polyunsaturated fattyacids (PUFAs); FAT-2 is fully required for a sperm-attracting cue(perhaps an eicosanoid) secreted by oocytes, and partially required forthe polarizing activity of PAR-3, PAR-6, and other proteins; FAT-2 isalso required for a normally fast growth rate and movement rate, and fornormal body shape, defecation rhythm, and brood size; when expressed in yeast, FAT-2 exhibits a v+3 mode of desaturase activity, catalyzing double bond formation three carbons from an existing double bond. | Paper_evidence | WBPaper00003999 | |||||
| WBPaper00005233 | |||||||||
| WBPaper00005728 | |||||||||
| WBPaper00013538 | |||||||||
| WBPaper00013550 | |||||||||
| WBPaper00024509 | |||||||||
| WBPaper00027724 | |||||||||
| WBPaper00028527 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 10 Jun 2010 00:00:00 | ||||||||
| Automated_description | Enables stearoyl-CoA 9-desaturase activity. Involved in several processes, including collagen and cuticulin-based cuticle development; fatty acid biosynthetic process; and innate immune response. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W02A2.1a | |||||||
| W02A2.1b | |||||||||
| Corresponding_transcript | W02A2.1a.1 | ||||||||
| W02A2.1b.1 | |||||||||
| Other_sequence (153) | |||||||||
| Associated_feature | WBsf660885 | ||||||||
| WBsf979037 | |||||||||
| WBsf998380 | |||||||||
| WBsf998381 | |||||||||
| WBsf1018513 | |||||||||
| WBsf229419 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram1822 | ||||||||
| Expr6815 | |||||||||
| Expr1021921 | |||||||||
| Expr1030834 | |||||||||
| Expr1158089 | |||||||||
| Expr2011435 | |||||||||
| Expr2029673 | |||||||||
| Drives_construct | WBCnstr00003419 | ||||||||
| WBCnstr00036975 | |||||||||
| Construct_product | WBCnstr00036975 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (258) | |||||||||
| Interaction (211) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | IV | Position | 8.52821 | Error | 0.001854 | |||
| Positive | Positive_clone | W02A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4297 | |||||||
| 4298 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (56) | |||||||||
| Remark | M03A8.1 link removed by agreement. [sdm 0107] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
