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WormBase Tree Display for Gene: WBGene00001385

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Name Class

WBGene00001385EvidencePaper_evidenceWBPaper00005754
SMapS_parentSequenceF02A9
IdentityVersion1
NameCGC_namefar-1
Sequence_nameF02A9.2
Molecular_nameF02A9.2
F02A9.2.1
CE00133
Other_nameCELE_F02A9.2Accession_evidenceNDBBX284603
Public_namefar-1
DB_infoDatabaseAceViewgene3K170
WormQTLgeneWBGene00001385
WormFluxgeneWBGene00001385
NDBlocus_tagCELE_F02A9.2
PanthergeneCAEEL|WormBase=WBGene00001385|UniProtKB=P34382
familyPTHR31418
NCBIgene176283
RefSeqproteinNM_001268049.4
SwissProtUniProtAccP34382
UniProt_GCRPUniProtAccP34382
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:24WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfar
Allele (13)
RNASeq_FPKM (74)
GO_annotation00042049
00042050
00042051
00108642
Ortholog (34)
ParalogWBGene00001391Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001386Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00001389Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001387Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015578Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001388Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001390Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001392Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionfar-1 encodes a fatty acid/retinol binding protein; expressed throughout development with highest expression levels in L3 stage larvae and in adult males.Paper_evidenceWBPaper00005754
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable lipid binding activity. Predicted to be located in extracellular region. Expressed in male.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF02A9.2
Corresponding_CDS_historyF02A9.2b:wp275
Corresponding_transcriptF02A9.2.1
Other_sequenceCBC00161_3
CGC00731_1
FD517651.1
CBC14566_1
CJC03649_1
CGC00033_1
Associated_featureWBsf651334
WBsf651335
WBsf651336
WBsf667231
WBsf667232
WBsf993566
WBsf993567
WBsf227237
WBsf227238
Experimental_infoRNAi_resultWBRNAi00043785Inferred_automaticallyRNAi_primary
WBRNAi00030562Inferred_automaticallyRNAi_primary
WBRNAi00006994Inferred_automaticallyRNAi_primary
WBRNAi00008600Inferred_automaticallyRNAi_primary
Expr_patternExpr2391
Expr1013415
Expr1030830
Expr1147762
Expr2011421
Expr2029658
Drives_constructWBCnstr00036983
Construct_productWBCnstr00036983
Microarray_results (25)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00033444:BacteriaDiet_regulated
WBPaper00037047:aging_accelerated_insoluble_protein
WBPaper00037047:insoluble_protein
WBPaper00037055:DAF-16_binding_DNA
WBPaper00037615:hypoxia_upregulated
WBPaper00037682:sma-2_sma-4_upregulated
WBPaper00038289:oocyte_protein
WBPaper00038357:atx-3_regulated_heat-shock
WBPaper00040209:B.thuringiensis_upregulated_MY15
WBPaper00040755:LRRK2(R1441C)-Tau_vs_N2_upregulated
WBPaper00040755:LRRK2(R1441C)-Tau_vs_Tau_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_upregulated_HeatShock
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045460:Co-expression_Cluster_3
WBPaper00045521:Spermatogenic
WBPaper00045571:germline-ablation_upregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00046121:ecdoderm_unique
WBPaper00046303:P.aeruginosa_downregulated_protein
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048910:mRNA-interacting_protein
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049217:DAF-16_downregulated
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00050053:muscle_enriched_Day4
WBPaper00050053:muscle_enriched_Day12
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050599:nicotine(0.01mM)_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051558:fog-2(q71)_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053321:mes-4(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053615:SMO-1_target
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053814:25C_downregulated_OP50
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055827:pfd-6(gk493446)_downregulated
WBPaper00055897:heat-shock_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056474:ivermectin-resistent_vs_N2_upregulated_protein
WBPaper00056826:hmc_biased
WBPaper00056868:P.aeruginosa_downregulated_smallRNA
WBPaper00056900:ERH-2_interacting
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058678:DAF-12_upregulated_PVD
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058942:henn-1(pk2295)_upregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00059254:CSR-1_interacting
WBPaper00059328:mrps-5(RNAi)_upregulated_protein
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059763:neuron_expressed
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:nfki-1(cer1)_downregulated_L4
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061210:huIs179_upregulated
WBPaper00061285:wounding_0h_downregulated
WBPaper00061340:AIY
WBPaper00061340:AIZ
WBPaper00061340:ALM_BDU
WBPaper00061340:ALN
WBPaper00061340:AVD
WBPaper00061340:AVH
WBPaper00061340:AVK
WBPaper00061340:CAN
WBPaper00061340:Coelomocyte
WBPaper00061340:DA
WBPaper00061340:DA_DB
WBPaper00061340:DB
WBPaper00061340:DD
WBPaper00061340:mu_int_mu_anal
WBPaper00061340:mu_sph
WBPaper00061340:M_cell
WBPaper00061340:RIB
WBPaper00061340:RID
WBPaper00061340:RIH
WBPaper00061340:RIV
WBPaper00061340:RMD
WBPaper00061340:RME
WBPaper00061340:SMB
WBPaper00061340:SMD
WBPaper00061377:MYRF-1_interacting
WBPaper00061377:PAN-1_interacting
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:mup-2-unc-87_284
WBPaper00061651:Coelomocyte_enriched
WBPaper00061651:hmc_enriched
WBPaper00061651:HSN_enriched
WBPaper00061651:PDB_enriched
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062002:Day4-adult_secretome
WBPaper00062056:lin-35(n745)_downregulated
WBPaper00062056:lin-37(n758)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062518:atf-4_regulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064055:trl-1(cas1077)_downregulated_non-starved
WBPaper00064055:trl-1(cas1077)_downregulated_starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064505:tamoxifen_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00065120:body-muscle-transcriptome
WBPaper00065623:86
WBPaper00065841:7_2
WBPaper00065841:7_4
WBPaper00065841:12_0
WBPaper00065841:38_1
WBPaper00065841:38_3
WBPaper00065841:102_0
WBPaper00065841:110_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066085:hda-3(ok1991)_downregulated
cgc4386_cluster_2_5
cgc4489_group_8
WBPaper00005124:cholesterol_10-9M_regulated
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031060:2-deoxy-D-glucose_upregulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00034739:N2lessDR1350
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_I
WBPaper00037695:LD_3-day
WBPaper00039835:ifg-1_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_aging
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045673:colistin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_B
Interaction (24)
WBProcessWBbiopr:00000121
Map_infoMapIIIPosition0.143999Error0.003538
PositivePositive_cloneF02A9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4292
4293
Pseudo_map_position
ReferenceWBPaper00005754
WBPaper00049828
WBPaper00056474
Remark[Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal.
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene