WormBase Tree Display for Gene: WBGene00001390

WBGene00001390 Evidence: Paper_evidence: WBPaper00005754
  SMap: S_parent: Sequence: W02A2
  Identity: Version: 1
    Name: CGC_name: far-6
      Sequence_name: W02A2.2
      Molecular_name: W02A2.2
        W02A2.2.1
        CE21232
      Other_name: CELE_W02A2.2 Accession_evidence: NDB BX284604
      Public_name: far-6
    DB_info: Database: AceView gene 4O91
        WormQTL gene WBGene00001390
        WormFlux gene WBGene00001390
        NDB locus_tag CELE_W02A2.2
        Panther gene CAEEL|WormBase=WBGene00001390|UniProtKB=Q9XUB7
          family PTHR31418
        NCBI gene 189096
        RefSeq protein NM_070160.6
        TREEFAM TREEFAM_ID TF316252
        TrEMBL UniProtAcc Q9XUB7
        UniProt_GCRP UniProtAcc Q9XUB7
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:24 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: far
    Allele (23)
    Strain: WBStrain00001945
      WBStrain00032211
    RNASeq_FPKM (74)
    GO_annotation: 00108647
    Ortholog (42)
    Paralog: WBGene00001385 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001386 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001387 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001388 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001389 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001391 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015578 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001392 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lipid binding activity. Predicted to be located in extracellular region. Expressed in male. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W02A2.2
    Corresponding_transcript: W02A2.2.1
    Associated_feature: WBsf229420
      WBsf229421
  Experimental_info: RNAi_result: WBRNAi00019478 Inferred_automatically: RNAi_primary
      WBRNAi00036163 Inferred_automatically: RNAi_primary
      WBRNAi00054544 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1563
      Expr2396
      Expr6816
      Expr1013467
      Expr1158090
      Expr2011425
      Expr2029663
    Drives_construct: WBCnstr00002733
      WBCnstr00036978
    Construct_product: WBCnstr00036978
    Microarray_results (17)
    Expression_cluster (211)
    Interaction (209)
    WBProcess: WBbiopr:00000121
  Map_info: Map: IV Position: 8.53099 Error: 0.001148
    Positive: Positive_clone: W02A2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005754
    WBPaper00065716
  Remark: [Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal.
    Sequence connection corrected to W02A2.2 from W02A9.2 following advice from [Hodgkin J], [krb 020702]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene