WormBase Tree Display for Gene: WBGene00001385
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| WBGene00001385 | Evidence | Paper_evidence | WBPaper00005754 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F02A9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | far-1 | |||||||
| Sequence_name | F02A9.2 | ||||||||
| Molecular_name | F02A9.2 | ||||||||
| F02A9.2.1 | |||||||||
| CE00133 | |||||||||
| Other_name | CELE_F02A9.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | far-1 | ||||||||
| DB_info | Database | AceView | gene | 3K170 | |||||
| WormQTL | gene | WBGene00001385 | |||||||
| WormFlux | gene | WBGene00001385 | |||||||
| NDB | locus_tag | CELE_F02A9.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001385|UniProtKB=P34382 | |||||||
| family | PTHR31418 | ||||||||
| NCBI | gene | 176283 | |||||||
| RefSeq | protein | NM_001268049.4 | |||||||
| SwissProt | UniProtAcc | P34382 | |||||||
| UniProt_GCRP | UniProtAcc | P34382 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | far | ||||||||
| Allele (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042049 | ||||||||
| 00042050 | |||||||||
| 00042051 | |||||||||
| 00108642 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001391 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001386 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001389 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001387 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015578 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001388 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001390 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001392 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | far-1 encodes a fatty acid/retinol binding protein; expressed throughout development with highest expression levels in L3 stage larvae and in adult males. | Paper_evidence | WBPaper00005754 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid binding activity. Predicted to be located in extracellular region. Expressed in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F02A9.2 | |||||||
| Corresponding_CDS_history | F02A9.2b:wp275 | ||||||||
| Corresponding_transcript | F02A9.2.1 | ||||||||
| Other_sequence | CBC00161_3 | ||||||||
| CGC00731_1 | |||||||||
| FD517651.1 | |||||||||
| CBC14566_1 | |||||||||
| CJC03649_1 | |||||||||
| CGC00033_1 | |||||||||
| Associated_feature | WBsf651334 | ||||||||
| WBsf651335 | |||||||||
| WBsf651336 | |||||||||
| WBsf667231 | |||||||||
| WBsf667232 | |||||||||
| WBsf993566 | |||||||||
| WBsf993567 | |||||||||
| WBsf227237 | |||||||||
| WBsf227238 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043785 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030562 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006994 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008600 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2391 | ||||||||
| Expr1013415 | |||||||||
| Expr1030830 | |||||||||
| Expr1147762 | |||||||||
| Expr2011421 | |||||||||
| Expr2029658 | |||||||||
| Drives_construct | WBCnstr00036983 | ||||||||
| Construct_product | WBCnstr00036983 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (215) | |||||||||
| Interaction (24) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | III | Position | 0.143999 | Error | 0.003538 | |||
| Positive | Positive_clone | F02A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4292 | |||||||
| 4293 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005754 | ||||||||
| WBPaper00049828 | |||||||||
| WBPaper00056474 | |||||||||
| Remark | [Jan Bradley] We have tested fatty acid and retinol binding of 3 of far-1 to far-6; all are expressed and we have assumed the others are able to bind fatty acids based on sequence similarity. There is a slight problem with the gene finder/genome sequence of F15B9.3 as it predicts the far-5 gene to be continuous with the c terminal of a lag-2 gene. We've tried v hard to see if the whole lag 2/far gene is transcribed and it doesn't seem to be but we can find an sl-far gene transcript with specific primers for the c terminal. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
