WormBase Tree Display for Gene: WBGene00001163
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| WBGene00001163 | SMap | S_parent | Sequence | C43F9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | efn-2 | Person_evidence | WBPerson893 | |||||
| Sequence_name | C43F9.8 | ||||||||
| Molecular_name | C43F9.8 | ||||||||
| C43F9.8.1 | |||||||||
| CE35430 | |||||||||
| Other_name | CELE_C43F9.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | efn-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | efn | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00029134 | ||||||||
| WBStrain00029135 | |||||||||
| WBStrain00005372 | |||||||||
| WBStrain00005375 | |||||||||
| WBStrain00005671 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00100323 | ||||||||
| 00100324 | |||||||||
| 00100325 | |||||||||
| 00100326 | |||||||||
| 00100327 | |||||||||
| 00108358 | |||||||||
| Ortholog (52) | |||||||||
| Paralog | WBGene00006869 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001165 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001164 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in plasma membrane. Expressed in several structures, including excretory gland cell; head neurons; motor neurons; pharyngeal muscle cell; and retrovesicular ganglion neurons. Human ortholog(s) of this gene implicated in several diseases, including craniofrontonasal syndrome; gastrointestinal system cancer (multiple); and varicose veins. Is an ortholog of human EFNB1 (ephrin B1) and EFNB3 (ephrin B3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1520 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3227) | ||||
| DOID:3748 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3227) | ||||||
| DOID:1934 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3226) | ||||||
| DOID:0080199 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3227) | ||||||
| DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3226,HGNC:3227) | ||||||
| DOID:799 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3227) | ||||||
| DOID:9261 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3227) | ||||||
| DOID:14737 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3226) | ||||||
| Molecular_info | Corresponding_CDS | C43F9.8 | |||||||
| Corresponding_CDS_history | C43F9.8:wp109 | ||||||||
| Corresponding_transcript | C43F9.8.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (25) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042393 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022852 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033551 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8265 | ||||||||
| Expr8266 | |||||||||
| Expr11224 | |||||||||
| Expr1028720 | |||||||||
| Expr1030741 | |||||||||
| Expr1146384 | |||||||||
| Expr2011192 | |||||||||
| Expr2029428 | |||||||||
| Drives_construct | WBCnstr00013220 | ||||||||
| WBCnstr00013221 | |||||||||
| WBCnstr00018077 | |||||||||
| WBCnstr00037055 | |||||||||
| Construct_product | WBCnstr00013220 | ||||||||
| WBCnstr00037055 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (203) | |||||||||
| Interaction (17) | |||||||||
| Anatomy_function | WBbtf0219 | ||||||||
| WBProcess | WBbiopr:00000120 | ||||||||
| Map_info | Map | IV | Position | 4.64008 | Error | 0.000248 | |||
| Positive | Positive_clone | C43F9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4275 | |||||||
| 5330 | |||||||||
| 4321 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (26) | |||||||||
| Remark | Sequence connection from [Wang X, Culotti JG, Pawson T] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
