WormBase Tree Display for Gene: WBGene00001107

WBGene00001107 SMap: S_parent: Sequence: F58B3
  Identity: Version: 1
    Name: CGC_name: dsl-5 Person_evidence: WBPerson220
      Sequence_name: F58B3.8
      Molecular_name: F58B3.8
        F58B3.8.1
        CE06010
      Other_name: CELE_F58B3.8 Accession_evidence: NDB BX284604
      Public_name: dsl-5
    DB_info: Database: AceView gene 4M380
        WormQTL gene WBGene00001107
        WormFlux gene WBGene00001107
        NDB locus_tag CELE_F58B3.8
        Panther gene CAEEL|WormBase=WBGene00001107|UniProtKB=Q20971
          family PTHR22669
        NCBI gene 186492
        RefSeq protein NM_069790.3
        TREEFAM TREEFAM_ID TF315366
        TrEMBL UniProtAcc Q20971
        UniProt_GCRP UniProtAcc Q20971
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dsl
    Allele (20)
    Strain: WBStrain00031510
    RNASeq_FPKM (74)
    GO_annotation: 00069824
      00069825
      00069826
      00108270
      00108271
      00108272
      00108273
      00108274
    Ortholog (17)
    Paralog: WBGene00001103 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00001104 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00001105 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00002246 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00001108 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00001109 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00077551 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00021525 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00021513 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: dsl-5 encodes a putative secreted protein with single DSL and EGF domainsin series, somewhat like Delta/LAG-2; DSL-5 belongs to a nematode-specificfamily of Delta/LAG-2-like proteins that includes DSL-1, -2, -3, -5, -6,and -7. Paper_evidence: WBPaper00006450
          Curator_confirmed: WBPerson567
          Date_last_updated: 21 Aug 2006 00:00:00
      Automated_description: Predicted to enable Notch binding activity. Predicted to be involved in cell fate specification. Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F58B3.8
    Corresponding_transcript: F58B3.8.1
    Associated_feature: WBsf997892
      WBsf1018236
      WBsf1018237
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr2848
      Expr1012023
      Expr1152691
      Expr2011109
      Expr2029345
    Drives_construct: WBCnstr00007162
      WBCnstr00010983
      WBCnstr00037082
    Construct_product: WBCnstr00037082
    Microarray_results (17)
    Expression_cluster: WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00048690:gonad-hermaphrodite-biased
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055137:S.maltophilia_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055944:C.butyricum_vs_OP50_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:ckr-1-T09B9.3
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00063926:chd-7(gk290)_upregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065746:tmc-1(rg1003)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_10
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Serratia_marcesens_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_H
      WBPaper00045673:colistin_upregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
    Interaction (30)
  Map_info: Map: IV Position: 5.05963 Error: 0.0057
    Positive: Positive_clone: F58B3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4270
    Pseudo_map_position
  Reference: WBPaper00006450
    WBPaper00017594
    WBPaper00034675
    WBPaper00040714
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene