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WormBase Tree Display for Gene: WBGene00001105

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Name Class

WBGene00001105SMapS_parentSequenceY41D4B
IdentityVersion1
NameCGC_namedsl-3Person_evidenceWBPerson220
Sequence_nameY41D4B.10
Molecular_nameY41D4B.10a
Y41D4B.10a.1
CE27622
Y41D4B.10b
CE48623
Y41D4B.10b.1
Other_nameCELE_Y41D4B.10Accession_evidenceNDBBX284604
Public_namedsl-3
DB_infoDatabaseAceViewgene4C377
WormQTLgeneWBGene00001105
WormFluxgeneWBGene00001105
NDBlocus_tagCELE_Y41D4B.10
PanthergeneCAEEL|WormBase=WBGene00001105|UniProtKB=Q95Y10
familyPTHR22669
NCBIgene176970
RefSeqproteinNM_001380053.1
NM_067707.5
TrEMBLUniProtAccU4PBR7
Q95Y10
UniProt_GCRPUniProtAccQ95Y10
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:23WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdsl
Allele (96)
StrainWBStrain00033146
RNASeq_FPKM (74)
GO_annotation00089524
00089525
00089526
00108263
00108264
00108265
00108266
00108267
OrthologWBGene00068510Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00072144Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034321Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00081937Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00086331Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190662Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00133412Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g550Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g21669Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g702Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16498Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25532Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15257Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g23070Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g6825Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4309Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-dsl-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10602Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00214.g7216Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05589Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_012328Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_012375Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_012418Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_012419Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrIV_pilon.g9706Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00001103Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001104Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00002246Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001107Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001108Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001109Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00021525Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00021513Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptiondsl-3 encodes a putative secreted protein with single DSL and EGF domainsin series, somewhat like Delta/LAG-2; DSL-3 belongs to a nematode-specificfamily of Delta/LAG-2-like proteins that includes DSL-1, -2, -3, -5, -6,and -7.Paper_evidenceWBPaper00006450
Curator_confirmedWBPerson567
Date_last_updated04 Apr 2008 00:00:00
Automated_descriptionPredicted to enable Notch binding activity. Predicted to be involved in cell fate specification. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (4)
Experimental_infoRNAi_resultWBRNAi00081020Inferred_automaticallyRNAi_primary
WBRNAi00081002Inferred_automaticallyRNAi_primary
WBRNAi00063601Inferred_automaticallyRNAi_primary
WBRNAi00020476Inferred_automaticallyRNAi_primary
WBRNAi00056377Inferred_automaticallyRNAi_primary
WBRNAi00081001Inferred_automaticallyRNAi_primary
WBRNAi00067809Inferred_automaticallyRNAi_primary
WBRNAi00063608Inferred_automaticallyRNAi_primary
WBRNAi00081019Inferred_automaticallyRNAi_primary
Expr_patternExpr2846
Expr1023860
Expr1030705
Expr1159864
Expr2011107
Expr2029343
Drives_constructWBCnstr00010981
Microarray_results (20)
Expression_cluster (190)
InteractionWBInteraction000007263
WBInteraction000051472
WBInteraction000051473
WBInteraction000051490
WBInteraction000051491
WBInteraction000569675
Map_infoMapIVPosition-16.5057Error0.022376
PositivePositive_cloneY41D4BInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00006450
WBPaper00026373
WBPaper00034675
WBPaper00040714
WBPaper00043433
WBPaper00053579
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene