WormBase Tree Display for Gene: WBGene00001085
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| WBGene00001085 | SMap | S_parent | Sequence | C25G4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-26 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C25G4.5 | ||||||||
| Molecular_name | C25G4.5 | ||||||||
| C25G4.5.1 | |||||||||
| CE08398 | |||||||||
| Other_name | CELE_C25G4.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dpy-26 | ||||||||
| DB_info | Database | AceView | gene | 4N212 | |||||
| WormQTL | gene | WBGene00001085 | |||||||
| WormFlux | gene | WBGene00001085 | |||||||
| NDB | locus_tag | CELE_C25G4.5 | |||||||
| NCBI | gene | 178196 | |||||||
| RefSeq | protein | NM_069977.9 | |||||||
| SwissProt | UniProtAcc | G5EGE9 | |||||||
| TREEFAM | TREEFAM_ID | TF317844 | |||||||
| UniProt_GCRP | UniProtAcc | G5EGE9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00089317 | ||||||||
| Allele (97) | |||||||||
| Legacy_information | n199mat : XX daughters of n199/+ mothers are maternally rescued weak dumpy phenotype with protruding vulva (ES2) 4% Him; XX daughters of n199/n199 mothers are severely dumpy and Him (2% of brood) or die as embryos or young larvae (98% of XX brood). XO n199 animals are non-dumpy almost wildtype males (ME3). Similar or slightly stronger phenotypes in n199/Df. NA3 (n198 (resembles n199) y6 (weaker phenotypes). | ||||||||
| See also n198, n199, y6 | |||||||||
| [C.elegansII] n199mat : XX daughters of n199/+ mothers are maternally rescued weak dumpy phenotype with protruding vulva (ES2) 4% Him; XX daughters of n199/n199 mothers are severely dumpy and Him (2% of brood) or die as embryos or young larvae (98% of XX brood). XO n199 animals are non-dumpy almost wildtype males (ME3). Similar or slightly stronger phenotypes in n199/Df. OA3: n198 (resembles n199), y6 (weaker phenotypes), y65. Cloned: encodes predicted 1263 aa novel protein; antibody staining indicates DPY-26 associated with X chromosomes in XX, diffuse nuclear in XO. [Plenefisch et al. 1989; TY] | |||||||||
| Strain | WBStrain00004455 | ||||||||
| WBStrain00004613 | |||||||||
| WBStrain00004619 | |||||||||
| WBStrain00004623 | |||||||||
| WBStrain00034748 | |||||||||
| WBStrain00054695 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP4516 | ||||||||
| Ortholog (18) | |||||||||
| Structured_description | Concise_description | dpy-26 encodes a novel, acidic protein that is highly conserved in other Caenorhabditis species; during development, dpy-26 activity is required for both dosage compensation and meiotic chromosome segregation; DPY-26 localizes to all meiotic chromosomes in the germline and to the hermaphrodite X chromosomes in somatic cells; SDC-1, SDC-2, and SDC-3 proteins form a complex and these three proteins, in turn, colocalize with DPY-26, DPY-27, and MIX-1 proteins both on the X chromosome and on a transgenic her-1(+) array. | Paper_evidence | WBPaper00002605 | |||||
| WBPaper00002606 | |||||||||
| WBPaper00005215 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 21 May 2007 00:00:00 | ||||||||
| Automated_description | Involved in dosage compensation by hypoactivation of X chromosome; meiotic sister chromatid segregation; and mitotic sister chromatid segregation. Located in condensed nuclear chromosome. Part of dosage compensation complex. Expressed widely. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C25G4.5 | |||||||
| Corresponding_transcript | C25G4.5.1 | ||||||||
| Other_sequence | U43562 | ||||||||
| CBC04037_1 | |||||||||
| CR05839 | |||||||||
| CRC11903_1 | |||||||||
| PPC12755_1 | |||||||||
| CBC13777_1 | |||||||||
| CBC01161_1 | |||||||||
| CRC07128_1 | |||||||||
| Associated_feature | WBsf652298 | ||||||||
| WBsf668431 | |||||||||
| WBsf231021 | |||||||||
| WBsf231022 | |||||||||
| WBsf231023 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041214 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011181 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080293 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080269 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080286 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080273 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080282 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1570 | ||||||||
| Expr9851 | |||||||||
| Expr1022687 | |||||||||
| Expr1030690 | |||||||||
| Expr1145250 | |||||||||
| Expr1200198 | |||||||||
| Expr2011067 | |||||||||
| Expr2029304 | |||||||||
| Drives_construct | WBCnstr00037090 | ||||||||
| Construct_product | WBCnstr00037090 | ||||||||
| Antibody | WBAntibody00000131 | ||||||||
| WBAntibody00000807 | |||||||||
| WBAntibody00000808 | |||||||||
| WBAntibody00001591 | |||||||||
| WBAntibody00001964 | |||||||||
| WBAntibody00002034 | |||||||||
| WBAntibody00002040 | |||||||||
| WBAntibody00002734 | |||||||||
| Microarray_results | SMD_C25G4.5 | ||||||||
| SMD_C25G4.5:2 | |||||||||
| 188069_s_at | |||||||||
| A_12_P105615 | |||||||||
| A_12_P157760 | |||||||||
| A_12_P157761 | |||||||||
| Aff_C25G4.5 | |||||||||
| GPL13394_WBGene00001085 | |||||||||
| GPL13914_C25G4.5 | |||||||||
| GPL14144_C25G4.5_2384-2443_0.849_79_B | |||||||||
| GPL14144_C25G4.5_2542-2601_0.856_70_A | |||||||||
| GPL14144_C25G4.5_3723-3782_0.967_1_C | |||||||||
| GPL19516_CGZ0005983 | |||||||||
| GPL21109_C25G4.5 | |||||||||
| GPL3518_CE08398 | |||||||||
| GPL8304_CE_WBGene00001085_A | |||||||||
| GPL8304_CE_WBGene00007731_A | |||||||||
| GPL8673_C25G4_3P00014 | |||||||||
| GPL8673_C25G4_5P02715 | |||||||||
| GPL8673_C25G4_5P03090 | |||||||||
| GPL8673_C25G4_5P03611 | |||||||||
| GPL9450_C25G4.5 | |||||||||
| cea2.c.26430 | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction (86) | |||||||||
| WBProcess | WBbiopr:00000056 | ||||||||
| WBbiopr:00000099 | |||||||||
| Map_info | Map | IV | Position | 5.94177 | Error | 0.00601 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C25G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 648 | |||||||
| 819 | |||||||||
| 823 | |||||||||
| 824 | |||||||||
| Multi_point | 568 | ||||||||
| 569 | |||||||||
| 570 | |||||||||
| 764 | |||||||||
| 765 | |||||||||
| 766 | |||||||||
| 767 | |||||||||
| 1916 | |||||||||
| 5281 | |||||||||
| Landmark_gene | |||||||||
| Reference (112) | |||||||||
| Method | Gene |
