WormBase Tree Display for Gene: WBGene00001080

WBGene00001080 Evidence: Paper_evidence: WBPaper00006355
  SMap: S_parent: Sequence: Y59A8B
  Identity: Version: 1
    Name: CGC_name: dpy-21 Person_evidence: WBPerson261
      Sequence_name: Y59A8B.1
      Molecular_name: Y59A8B.1a
        Y59A8B.1a.1
        CE26205
        Y59A8B.1b
      Other_name: Y59A8B.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y59A8B.1 Accession_evidence: NDB BX284605
      Public_name: dpy-21
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Molecular_info: Corresponding_CDS: Y59A8B.1a
    Corresponding_CDS_history: Y59A8B.1:wp139
    Corresponding_transcript: Y59A8B.1b
      Y59A8B.1a.1
    Other_sequence (17)
    Associated_feature: WBsf653522
      WBsf982072
      WBsf1002778
      WBsf1002779
      WBsf014601
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr2896
      Expr13514
      Expr1027959
      Expr1030687
      Expr1161165
      Expr2011064
      Expr2029301
    Regulate_expr_cluster: WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050801:DPY-21_dauer_regulome
    Antibody: WBAntibody00000707
      WBAntibody00000708
    Microarray_results (20)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_cDNA_12h
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044037:eat-2_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050015:ifg-1(RNAi)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00051404:alg-2(ok304)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053606:N2_vs_elt-7(tm840)_upregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:WDR-5.1_interacting_protein
      WBPaper00058711:paraquat_upregulated
      WBPaper00058969:RIS_enriched
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059194:KLF-1_interacting
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00061527:nrde-3-tra-4_10484
      WBPaper00062103:neuron_enriched
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_upregulated_starved
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064789:Day9_vs_Day1_downregulated_neuron
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4489_group_14
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00027111:rrf-1(pk1417)_upregulated
      WBPaper00027111:rrf-2(ok210)_upregulated
      WBPaper00031832:slr-2_regulated
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2lessDR1350
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
    Interaction (71)
    WBProcess: WBbiopr:00000056
  Map_info: Map: V Position: 13.3323 Error: 0.006986
    Well_ordered
    Positive: Inside_rearr: ozDf1
      Positive_clone: Y59A8B Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: ozDf2
    Mapping_data: 2_point (14)
      Multi_point (24)
      Pos_neg_data: 4305
        4291
        4292
        4293
        8970
        8983
    Landmark_gene
  Reference: WBPaper00000178
    WBPaper00000179
    WBPaper00000498
    WBPaper00000608
    WBPaper00000665
    WBPaper00000666
    WBPaper00000724
    WBPaper00000916
    WBPaper00000941
    WBPaper00000987
    WBPaper00001003
    WBPaper00001011
    WBPaper00001013
    WBPaper00001028
    WBPaper00001042
    WBPaper00001077
    WBPaper00001115
    WBPaper00001116
    WBPaper00001206
    WBPaper00001279
    WBPaper00001341
    WBPaper00001563
    WBPaper00001639
    WBPaper00001659
    WBPaper00001772
    WBPaper00001842
    WBPaper00001898
    WBPaper00001955
    WBPaper00001991
    WBPaper00002074
    WBPaper00002131
    WBPaper00002278
    WBPaper00002302
    WBPaper00002303
    WBPaper00002305
    WBPaper00002347
    WBPaper00002605
    WBPaper00002606
    WBPaper00002631
    WBPaper00002743
    WBPaper00002765
    WBPaper00003597
    WBPaper00004130
    WBPaper00004158
    WBPaper00004467
    WBPaper00005237
    WBPaper00005272
    WBPaper00006355
    WBPaper00013718
    WBPaper00013778
    WBPaper00013841
    WBPaper00013844
    WBPaper00013900
    WBPaper00013953
    WBPaper00014003
    WBPaper00014204
    WBPaper00014206
    WBPaper00014251
    WBPaper00014321
    WBPaper00014783
    WBPaper00014925
    WBPaper00014926
    WBPaper00015104
    WBPaper00015147
    WBPaper00015167
    WBPaper00015918
    WBPaper00015943
    WBPaper00016131
    WBPaper00016147
    WBPaper00016149
    WBPaper00016157
    WBPaper00016180
    WBPaper00016237
    WBPaper00016243
    WBPaper00016288
    WBPaper00016312
    WBPaper00016313
    WBPaper00016339
    WBPaper00016417
    WBPaper00016418
    WBPaper00016419
    WBPaper00016420
    WBPaper00016421
    WBPaper00016483
    WBPaper00016500
    WBPaper00016502
    WBPaper00016503
    WBPaper00016556
    WBPaper00016816
    WBPaper00017044
    WBPaper00017255
    WBPaper00017475
    WBPaper00018096
    WBPaper00018403
    WBPaper00021710
    WBPaper00022074
    WBPaper00022895
    WBPaper00027240
    WBPaper00027275
    WBPaper00027297
    WBPaper00029020
    WBPaper00030871
    WBPaper00030930
    WBPaper00031224
    WBPaper00035408
    WBPaper00038491
    WBPaper00038880
    WBPaper00040306
    WBPaper00042462
    WBPaper00042679
    WBPaper00043168
    WBPaper00043971
    WBPaper00044242
    WBPaper00046016
    WBPaper00048953
    WBPaper00050801
    WBPaper00053002
    WBPaper00053662
    WBPaper00053748
    WBPaper00055090
    WBPaper00062335
    WBPaper00062532
    WBPaper00064064
    WBPaper00065308
  Method: Gene